Variant report

Variant	rs56168571
Chromosome Location	chr11:73703778-73703779
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11821823	0.87[AMR][1000 genomes]
rs11825819	0.87[AMR][1000 genomes]
rs17132408	0.87[AMR][1000 genomes]
rs17132421	0.87[AMR][1000 genomes]
rs17132422	0.87[AMR][1000 genomes]
rs17132438	0.87[AMR][1000 genomes]
rs17132488	0.87[AMR][1000 genomes]
rs17132555	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs45570334	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55840703	0.87[AMR][1000 genomes]
rs55893487	0.87[AMR][1000 genomes]
rs55939206	0.87[AMR][1000 genomes]
rs56117405	0.87[AMR][1000 genomes]
rs56340309	0.87[AMR][1000 genomes]
rs56723437	1.00[AMR][1000 genomes]
rs56767203	0.87[AMR][1000 genomes]
rs58792356	0.87[AMR][1000 genomes]
rs59621450	0.87[AMR][1000 genomes]
rs60093210	0.87[AMR][1000 genomes]
rs60520592	0.87[AMR][1000 genomes]
rs61085412	0.87[AMR][1000 genomes]
rs61581672	0.87[AMR][1000 genomes]
rs61616797	0.87[AMR][1000 genomes]
rs7110607	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492091	chr11:73285970-73844424	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73695200-73711000	Weak transcription	Fetal Intestine Small	intestine
2	chr11:73701000-73706000	Enhancers	Primary T helper cells fromperipheralblood	blood
3	chr11:73701400-73706000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
4	chr11:73701600-73705800	Enhancers	Primary T cells from cord blood	blood
5	chr11:73701600-73706000	Enhancers	Primary B cells from cord blood	blood
6	chr11:73701600-73706200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr11:73701600-73706200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
8	chr11:73701800-73705400	Enhancers	Primary T cells fromperipheralblood	blood
9	chr11:73701800-73705800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr11:73702000-73711800	Enhancers	Primary B cells from peripheral blood	blood
11	chr11:73702200-73706400	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr11:73702200-73706400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr11:73702600-73706400	Weak transcription	Fetal Thymus	thymus
14	chr11:73702600-73711800	Weak transcription	Spleen	Spleen
15	chr11:73702800-73708600	Weak transcription	K562	blood
16	chr11:73702800-73711400	Weak transcription	Fetal Muscle Trunk	muscle
17	chr11:73703000-73704000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr11:73703000-73710000	Weak transcription	Fetal Muscle Leg	muscle
19	chr11:73703000-73719400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr11:73703200-73705800	Enhancers	Primary T helper cells PMA-I stimulated	--
21	chr11:73703200-73706000	Enhancers	GM12878-XiMat	blood
22	chr11:73703400-73703800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr11:73703600-73704000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr11:73703600-73704000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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