Variant report

Variant	rs60093210
Chromosome Location	chr11:73613189-73613190
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:73490665..73492196-chr11:73612144..73614771,2	MCF-7	breast:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11821823	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11822264	1.00[EUR][1000 genomes]
rs11822794	1.00[EUR][1000 genomes]
rs11823400	1.00[EUR][1000 genomes]
rs11824937	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11825819	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11826017	1.00[EUR][1000 genomes]
rs11827951	1.00[EUR][1000 genomes]
rs11828393	1.00[EUR][1000 genomes]
rs11829005	1.00[EUR][1000 genomes]
rs11829012	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17132408	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17132421	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17132422	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17132438	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17132488	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17132555	1.00[EUR][1000 genomes]
rs45476292	1.00[EUR][1000 genomes]
rs45570334	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55840703	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55893487	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55939206	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56117405	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56168571	0.87[AMR][1000 genomes]
rs56340309	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56378817	1.00[EUR][1000 genomes]
rs56723437	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56767203	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57579114	1.00[EUR][1000 genomes]
rs58792356	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59621450	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60520592	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60924318	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61085412	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61581672	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61616797	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61701946	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7110607	1.00[EUR][1000 genomes]
rs73543094	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530624	chr11:73114283-73646329	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv492091	chr11:73285970-73844424	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
3	nsv530641	chr11:73358393-73638725	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
4	nsv1038105	chr11:73552023-73673836	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv1035977	chr11:73581224-73617653	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73588800-73622000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr11:73588800-73623000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr11:73588800-73625200	Weak transcription	Small Intestine	intestine
4	chr11:73588800-73630000	Weak transcription	Colonic Mucosa	Colon
5	chr11:73588800-73630200	Weak transcription	HUVEC	blood vessel
6	chr11:73589000-73630200	Weak transcription	Fetal Brain Male	brain
7	chr11:73589400-73629200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr11:73591600-73618000	Weak transcription	K562	blood
9	chr11:73596000-73640800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr11:73600400-73618000	Weak transcription	Fetal Heart	heart
11	chr11:73601000-73640400	Weak transcription	Stomach Mucosa	stomach
12	chr11:73601600-73630000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr11:73602000-73622800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr11:73602000-73624000	Weak transcription	Psoas Muscle	Psoas
15	chr11:73602400-73644800	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr11:73603000-73613200	Weak transcription	Brain Germinal Matrix	brain
17	chr11:73604400-73623400	Weak transcription	Fetal Kidney	kidney
18	chr11:73605200-73618400	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr11:73606600-73630000	Weak transcription	A549	lung
20	chr11:73606800-73638200	Weak transcription	NHLF	lung
21	chr11:73607200-73628400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr11:73609600-73613600	Strong transcription	Left Ventricle	heart
23	chr11:73609600-73613800	Strong transcription	HUES64 Cell Line	embryonic stem cell
24	chr11:73609600-73613800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr11:73609600-73613800	Strong transcription	Skeletal Muscle Female	skeletal muscle
26	chr11:73609600-73614200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr11:73609600-73614200	Strong transcription	Fetal Muscle Leg	muscle
28	chr11:73609600-73614400	Strong transcription	Primary B cells from peripheral blood	blood
29	chr11:73609600-73614400	Strong transcription	Fetal Muscle Trunk	muscle
30	chr11:73609600-73614600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr11:73609600-73614600	Strong transcription	Primary T helper cells PMA-I stimulated	--
32	chr11:73609800-73613600	Strong transcription	Rectal Mucosa Donor 29	rectum
33	chr11:73609800-73613800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr11:73609800-73614200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr11:73609800-73614400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
36	chr11:73609800-73614400	Strong transcription	Liver	Liver
37	chr11:73609800-73614400	Strong transcription	Monocytes-CD14+_RO01746	blood
38	chr11:73609800-73614600	Strong transcription	Primary B cells from cord blood	blood
39	chr11:73610000-73613600	Strong transcription	HUES6 Cell Line	embryonic stem cell
40	chr11:73610000-73613600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr11:73610000-73613600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
42	chr11:73610000-73613600	Strong transcription	Dnd41	blood
43	chr11:73610000-73613800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr11:73610000-73613800	Strong transcription	Primary T cells from cord blood	blood
45	chr11:73610000-73613800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr11:73610000-73614200	Strong transcription	Duodenum Mucosa	Duodenum
47	chr11:73610000-73614400	Strong transcription	Primary T cells fromperipheralblood	blood
48	chr11:73610000-73614600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr11:73610000-73614800	Strong transcription	Primary monocytes fromperipheralblood	blood
50	chr11:73610200-73613400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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