Variant report

Variant	rs55840703
Chromosome Location	chr11:73661690-73661691
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	HEY1	chr11:73661413-73661734	HepG2	liver:	n/a	n/a
2	HCFC1	chr11:73661604-73662718	Hela-S3	cervix:	n/a	n/a

Variant related genes	Relation type
DNAJB13	TF binding region

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11821823	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11822794	1.00[EUR][1000 genomes]
rs11824937	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11825819	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11829012	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17132408	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17132421	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17132422	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17132438	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17132488	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17132555	1.00[EUR][1000 genomes]
rs45476292	1.00[EUR][1000 genomes]
rs45570334	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55893487	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55939206	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56117405	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56168571	0.87[AMR][1000 genomes]
rs56340309	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56723437	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56767203	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57579114	1.00[EUR][1000 genomes]
rs58792356	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59621450	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60093210	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60520592	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60924318	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61085412	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61581672	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61616797	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61701946	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7110607	1.00[EUR][1000 genomes]
rs73543094	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492091	chr11:73285970-73844424	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
2	nsv1038105	chr11:73552023-73673836	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73639400-73668000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr11:73640800-73667000	Weak transcription	Pancreas	Pancrea
3	chr11:73641400-73672200	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr11:73650200-73666800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr11:73650200-73667000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr11:73657600-73662000	Weak transcription	Brain Anterior Caudate	brain
7	chr11:73658200-73662000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr11:73658600-73662000	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr11:73660600-73667000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr11:73660800-73662000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr11:73661000-73661800	Enhancers	HepG2	liver

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