Variant report

Variant	rs3024863
Chromosome Location	chr2:191924372-191924373
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs16833146	1.00[EUR][1000 genomes]
rs3024881	1.00[EUR][1000 genomes]
rs41363648	1.00[EUR][1000 genomes]
rs41381545	1.00[EUR][1000 genomes]
rs41383548	1.00[EUR][1000 genomes]
rs41390345	1.00[EUR][1000 genomes]
rs41429347	1.00[EUR][1000 genomes]
rs41446247	1.00[EUR][1000 genomes]
rs41457850	1.00[EUR][1000 genomes]
rs41463952	1.00[EUR][1000 genomes]
rs41508653	1.00[EUR][1000 genomes]
rs45581732	1.00[EUR][1000 genomes]
rs45582434	1.00[EUR][1000 genomes]
rs45625838	1.00[EUR][1000 genomes]
rs57478729	1.00[EUR][1000 genomes]
rs58224506	1.00[EUR][1000 genomes]
rs58801716	1.00[EUR][1000 genomes]
rs61276563	1.00[EUR][1000 genomes]
rs6712504	1.00[EUR][1000 genomes]
rs6721631	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834493	chr2:191811373-191974240	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv998232	chr2:191841497-192020361	Genic enhancers Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:191915000-191931200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr2:191916800-191938600	Weak transcription	Placenta	Placenta
3	chr2:191917000-191931000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr2:191917000-191931000	Weak transcription	Adipose Nuclei	Adipose
5	chr2:191917600-191931200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr2:191917600-191931200	Weak transcription	Fetal Lung	lung
7	chr2:191917800-191931000	Weak transcription	Osteobl	bone
8	chr2:191917800-191935600	Weak transcription	Fetal Heart	heart
9	chr2:191918200-191930400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr2:191918400-191939000	Weak transcription	Liver	Liver
11	chr2:191919800-191930400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr2:191921400-191925600	Weak transcription	Thymus	Thymus
13	chr2:191921400-191929400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr2:191922000-191925600	Weak transcription	Fetal Thymus	thymus
15	chr2:191922200-191926200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr2:191922200-191926200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr2:191922400-191924800	Weak transcription	Primary T cells from cord blood	blood
18	chr2:191922600-191924800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr2:191922800-191924400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr2:191922800-191924800	Strong transcription	Primary T cells fromperipheralblood	blood
21	chr2:191922800-191925200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr2:191922800-191925200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr2:191923800-191926000	Genic enhancers	Primary T helper cells PMA-I stimulated	--
24	chr2:191924000-191924400	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr2:191924000-191924400	Strong transcription	Primary T killer memory cells from peripheral blood	blood
26	chr2:191924000-191924600	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr2:191924000-191924800	Strong transcription	Primary T helper cells fromperipheralblood	blood
28	chr2:191924000-191925000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr2:191924200-191924400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr2:191924200-191924600	ZNF genes & repeats	Aorta	Aorta
31	chr2:191924200-191924800	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
32	chr2:191924200-191925000	Genic enhancers	Dnd41	blood

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