Variant report

Variant	rs58224506
Chromosome Location	chr2:191951625-191951626
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs16833146	1.00[EUR][1000 genomes]
rs3024863	1.00[EUR][1000 genomes]
rs3024881	1.00[EUR][1000 genomes]
rs41363648	1.00[EUR][1000 genomes]
rs41381545	1.00[EUR][1000 genomes]
rs41383548	1.00[EUR][1000 genomes]
rs41390345	1.00[EUR][1000 genomes]
rs41429347	1.00[EUR][1000 genomes]
rs41446247	1.00[EUR][1000 genomes]
rs41457850	1.00[EUR][1000 genomes]
rs41463952	1.00[EUR][1000 genomes]
rs41508653	1.00[EUR][1000 genomes]
rs45581732	1.00[EUR][1000 genomes]
rs45582434	1.00[EUR][1000 genomes]
rs45625838	1.00[EUR][1000 genomes]
rs57478729	1.00[EUR][1000 genomes]
rs58801716	1.00[EUR][1000 genomes]
rs61276563	1.00[EUR][1000 genomes]
rs6712504	1.00[EUR][1000 genomes]
rs6721631	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834493	chr2:191811373-191974240	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv998232	chr2:191841497-192020361	Genic enhancers Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:191935800-191954200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr2:191936600-191958200	Weak transcription	Primary T cells from cord blood	blood
3	chr2:191941000-191957600	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr2:191943600-191956800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr2:191943800-191953400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr2:191943800-191957600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr2:191944000-191953000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr2:191944000-191958000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr2:191944000-191973000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr2:191949200-191953000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr2:191950800-191952400	Strong transcription	Primary T helper cells fromperipheralblood	blood
12	chr2:191951000-191952000	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
13	chr2:191951000-191952200	Enhancers	Liver	Liver
14	chr2:191951200-191954400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr2:191951200-191977800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr2:191951400-191952800	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr2:191951400-191952800	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr2:191951600-191952000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
19	chr2:191951600-191952400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr2:191951600-191953000	Enhancers	HUES48 Cell Line	embryonic stem cell

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