Variant report

Variant	rs304465
Chromosome Location	chr10:91274790-91274791
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs170001	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs188570	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs303182	0.82[EUR][1000 genomes]
rs303187	0.88[EUR][1000 genomes]
rs304467	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7087280	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91263600-91274800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr10:91264800-91277800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr10:91273000-91274800	Enhancers	Muscle Satellite Cultured Cells	--
4	chr10:91273000-91274800	Enhancers	HSMM	muscle
5	chr10:91273200-91275000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr10:91273400-91274800	Enhancers	HSMMtube	muscle
7	chr10:91273600-91275000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr10:91273600-91275200	Enhancers	Fetal Heart	heart
9	chr10:91273800-91274800	Enhancers	Pancreas	Pancrea
10	chr10:91274000-91274800	Enhancers	NHLF	lung
11	chr10:91274000-91275000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr10:91274000-91275000	Enhancers	NHDF-Ad	bronchial
13	chr10:91274200-91274800	Enhancers	Osteobl	bone
14	chr10:91274200-91275000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr10:91274200-91275000	Enhancers	NH-A	brain
16	chr10:91274400-91275000	Weak transcription	Right Atrium	heart
17	chr10:91274400-91276800	Weak transcription	Left Ventricle	heart
18	chr10:91274600-91274800	Weak transcription	Right Ventricle	heart
19	chr10:91274600-91275000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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