Variant report

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12570001	0.81[CEU][hapmap]
rs12772414	0.92[CEU][hapmap]
rs160051	0.84[CEU][hapmap];0.84[EUR][1000 genomes]
rs170001	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs303180	0.92[CEU][hapmap]
rs303182	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs303185	0.92[EUR][1000 genomes]
rs303186	0.84[CEU][hapmap];0.87[GIH][hapmap];0.93[TSI][hapmap];0.92[EUR][1000 genomes]
rs303187	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs303200	0.84[CEU][hapmap];0.91[TSI][hapmap];0.84[EUR][1000 genomes]
rs303201	0.84[CEU][hapmap];0.84[EUR][1000 genomes]
rs303206	0.83[EUR][1000 genomes]
rs303207	0.84[CEU][hapmap];0.89[TSI][hapmap];0.83[EUR][1000 genomes]
rs304465	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs304467	0.83[CEU][hapmap];0.85[CHB][hapmap];0.89[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7087280	0.96[CEU][hapmap];0.82[CHD][hapmap];0.81[MEX][hapmap];0.82[TSI][hapmap];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs188570	NUDT9P1	cis	parietal	SCAN
rs188570	HHEX	cis	cerebellum	SCAN

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91251200-91274000	Weak transcription	Left Ventricle	heart
2	chr10:91259200-91268600	Weak transcription	Gastric	stomach
3	chr10:91261600-91264200	Enhancers	Muscle Satellite Cultured Cells	--
4	chr10:91262000-91263600	Enhancers	NHDF-Ad	bronchial
5	chr10:91262000-91263800	Enhancers	HSMM	muscle
6	chr10:91262000-91264000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr10:91262200-91263800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr10:91262200-91263800	Enhancers	NH-A	brain
9	chr10:91262200-91263800	Enhancers	NHEK	skin
10	chr10:91262200-91263800	Enhancers	NHLF	lung
11	chr10:91262200-91264200	Enhancers	Osteobl	bone
12	chr10:91262200-91265600	Weak transcription	Fetal Muscle Trunk	muscle
13	chr10:91262400-91263600	Enhancers	Right Atrium	heart
14	chr10:91262600-91273800	Weak transcription	Pancreas	Pancrea
15	chr10:91262800-91263800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr10:91262800-91264800	Enhancers	Pancreatic Islets	Pancreatic Islet
17	chr10:91263200-91264000	Enhancers	Fetal Thymus	thymus
18	chr10:91263400-91263600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr10:91263400-91263600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
20	chr10:91263400-91263600	Enhancers	Esophagus	oesophagus
21	chr10:91263400-91263600	Enhancers	Placenta	Placenta
22	chr10:91263400-91264200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr10:91263400-91264200	Enhancers	Fetal Stomach	stomach

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