Variant report

Variant	rs303201
Chromosome Location	chr10:91235883-91235884
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:91235846..91237981-chr10:91253017..91254786,2	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12570001	0.81[CEU][hapmap]
rs12772414	0.89[CEU][hapmap]
rs160051	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs188570	0.84[CEU][hapmap];0.84[EUR][1000 genomes]
rs215492	0.89[EUR][1000 genomes]
rs303163	0.89[EUR][1000 genomes]
rs303180	0.93[CEU][hapmap];0.82[CHB][hapmap];0.89[JPT][hapmap]
rs303182	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs303185	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs303186	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs303187	0.83[EUR][1000 genomes]
rs303200	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs303203	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs303206	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs303207	1.00[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs304467	0.82[CEU][hapmap]
rs7087280	0.88[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91224200-91236000	Weak transcription	Lung	lung
2	chr10:91226800-91237800	Weak transcription	Stomach Mucosa	stomach
3	chr10:91227000-91237800	Weak transcription	Osteobl	bone
4	chr10:91229400-91236400	Weak transcription	Fetal Intestine Small	intestine
5	chr10:91230600-91236200	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr10:91230800-91236000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr10:91230800-91237800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr10:91231400-91236000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr10:91234000-91237200	Enhancers	Fetal Lung	lung
10	chr10:91234400-91236800	Enhancers	Fetal Stomach	stomach
11	chr10:91234400-91236800	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr10:91234600-91236200	Enhancers	Adipose Nuclei	Adipose
13	chr10:91234600-91236200	Enhancers	Fetal Kidney	kidney
14	chr10:91234600-91236800	Enhancers	Rectal Smooth Muscle	rectum
15	chr10:91234600-91237200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr10:91234600-91237400	Enhancers	Skeletal Muscle Male	skeletal muscle
17	chr10:91234600-91238800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr10:91234600-91240400	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr10:91234600-91242400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr10:91234600-91242600	Enhancers	Muscle Satellite Cultured Cells	--
21	chr10:91234800-91236000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr10:91234800-91236400	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr10:91234800-91236600	Enhancers	Aorta	Aorta
24	chr10:91234800-91237200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr10:91235000-91236000	Weak transcription	Esophagus	oesophagus
26	chr10:91235000-91236600	Enhancers	NHLF	lung
27	chr10:91235000-91236800	Enhancers	Placenta	Placenta
28	chr10:91235000-91237000	Enhancers	A549	lung
29	chr10:91235200-91236200	Weak transcription	Right Ventricle	heart
30	chr10:91235200-91236400	Enhancers	HUES64 Cell Line	embryonic stem cell
31	chr10:91235200-91236400	Weak transcription	Fetal Intestine Large	intestine
32	chr10:91235200-91236800	Enhancers	HUES48 Cell Line	embryonic stem cell
33	chr10:91235200-91236800	Enhancers	HUES6 Cell Line	embryonic stem cell
34	chr10:91235200-91237000	Flanking Active TSS	HepG2	liver
35	chr10:91235200-91240400	Enhancers	NH-A	brain
36	chr10:91235400-91236000	Enhancers	ES-I3 Cell Line	embryonic stem cell
37	chr10:91235400-91236400	Enhancers	NHDF-Ad	bronchial
38	chr10:91235400-91236800	Enhancers	Placenta Amnion	Placenta Amnion
39	chr10:91235600-91236000	Active TSS	Brain Anterior Caudate	brain
40	chr10:91235600-91236000	Active TSS	Brain Cingulate Gyrus	brain
41	chr10:91235600-91236000	Active TSS	Brain Inferior Temporal Lobe	brain
42	chr10:91235600-91236200	Flanking Active TSS	Liver	Liver
43	chr10:91235600-91236400	Enhancers	iPS-18 Cell Line	embryonic stem cell
44	chr10:91235600-91236400	Enhancers	iPS-20b Cell Line	embryonic stem cell
45	chr10:91235600-91236400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
46	chr10:91235600-91236600	Flanking Active TSS	Stomach Smooth Muscle	stomach
47	chr10:91235600-91236800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr10:91235600-91238800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr10:91235600-91239200	Enhancers	HMEC	breast
50	chr10:91235600-91239800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links