Variant report

Variant	rs303186
Chromosome Location	chr10:91251013-91251014
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12570001	0.81[CEU][hapmap]
rs12772414	0.92[CEU][hapmap]
rs160051	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs188570	0.84[CEU][hapmap];0.87[GIH][hapmap];0.93[TSI][hapmap];0.92[EUR][1000 genomes]
rs215492	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs303163	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs303180	0.92[CEU][hapmap];0.95[CHB][hapmap];0.84[JPT][hapmap]
rs303182	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs303185	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs303187	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs303200	1.00[CEU][hapmap];0.86[CHB][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs303201	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs303203	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs303206	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs303207	1.00[CEU][hapmap];0.82[CHB][hapmap];0.88[GIH][hapmap];0.84[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs304467	0.86[CEU][hapmap];0.83[EUR][1000 genomes]
rs7087280	0.88[CEU][hapmap];0.80[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs303186	NUDT9P1	cis	parietal	SCAN

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91239000-91252600	Weak transcription	Right Ventricle	heart
2	chr10:91239000-91261800	Weak transcription	Pancreas	Pancrea
3	chr10:91242000-91253800	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr10:91243800-91254000	Weak transcription	Right Atrium	heart
5	chr10:91249200-91251200	Enhancers	Fetal Intestine Large	intestine
6	chr10:91249200-91251200	Enhancers	Fetal Intestine Small	intestine
7	chr10:91250000-91251200	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr10:91250000-91251800	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr10:91250200-91251800	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr10:91250200-91251800	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr10:91250200-91252000	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr10:91250400-91251200	Enhancers	H1 Cell Line	embryonic stem cell
13	chr10:91250400-91251200	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr10:91250400-91251200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr10:91250400-91251600	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr10:91250400-91254000	Enhancers	Fetal Heart	heart
17	chr10:91250600-91254200	Weak transcription	HSMM	muscle
18	chr10:91250800-91251200	Enhancers	Left Ventricle	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links