Variant report

Variant	rs308616
Chromosome Location	chr13:62749471-62749472
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs2034288	0.88[EUR][1000 genomes]
rs308614	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs308615	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs308617	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs308618	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs308619	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs308620	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs308622	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs308623	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs308624	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs308625	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs308627	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs308628	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs308629	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs308630	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs308631	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs308633	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3118814	0.85[EUR][1000 genomes]
rs3118816	0.85[EUR][1000 genomes]
rs3118817	0.85[EUR][1000 genomes]
rs3118824	0.84[EUR][1000 genomes]
rs3118825	0.83[EUR][1000 genomes]
rs3128055	0.85[EUR][1000 genomes]
rs5020678	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs5020679	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs5020680	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs5020681	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs66824322	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7139822	0.92[CEU][hapmap];0.82[CHB][hapmap];0.89[JPT][hapmap]
rs7320109	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7320115	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7323089	0.92[CEU][hapmap];0.82[CHB][hapmap];0.89[JPT][hapmap]
rs7981757	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7982438	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7982706	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7983039	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7983391	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7987611	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7988008	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7989138	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7994456	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7994977	0.80[ASN][1000 genomes]
rs7995805	0.82[EUR][1000 genomes]
rs8001256	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9285236	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9317229	0.86[EUR][1000 genomes]
rs950159	0.92[CEU][hapmap];0.82[CHB][hapmap];0.89[JPT][hapmap]
rs9528477	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9528478	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9528494	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9528495	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9528496	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9528497	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9528498	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9528499	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9528503	0.91[CEU][hapmap];0.86[CHB][hapmap];0.87[JPT][hapmap]
rs9539442	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9539443	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9539452	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9539453	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9539454	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9539455	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9539456	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9539462	0.92[CEU][hapmap];0.82[CHB][hapmap];0.88[JPT][hapmap]
rs9539467	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948810	chr13:62003256-62968196	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv832630	chr13:62651865-62811428	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:62748400-62749600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr13:62748600-62749800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr13:62749000-62750200	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr13:62749000-62750400	Enhancers	HUES64 Cell Line	embryonic stem cell

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