Variant report

Variant	rs3118824
Chromosome Location	chr13:62830884-62830885
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs17061126	0.84[ASN][1000 genomes]
rs1887693	0.81[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs2034288	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs308614	0.83[EUR][1000 genomes]
rs308615	0.83[EUR][1000 genomes]
rs308616	0.84[EUR][1000 genomes]
rs308617	0.83[EUR][1000 genomes]
rs308618	0.84[EUR][1000 genomes]
rs308619	0.84[EUR][1000 genomes]
rs308620	0.84[EUR][1000 genomes]
rs308622	0.84[EUR][1000 genomes]
rs308623	0.84[EUR][1000 genomes]
rs308624	0.83[EUR][1000 genomes]
rs308627	0.84[EUR][1000 genomes]
rs308628	0.84[EUR][1000 genomes]
rs308629	0.84[EUR][1000 genomes]
rs308630	0.84[EUR][1000 genomes]
rs308631	0.84[EUR][1000 genomes]
rs3118813	0.86[ASN][1000 genomes]
rs3118814	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3118815	0.86[ASN][1000 genomes]
rs3118816	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3118817	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3118820	0.82[ASN][1000 genomes]
rs3118821	0.86[ASN][1000 genomes]
rs3118822	0.85[ASN][1000 genomes]
rs3118825	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3118826	0.86[ASN][1000 genomes]
rs3118828	0.84[ASN][1000 genomes]
rs3118829	0.86[ASN][1000 genomes]
rs3118830	0.86[ASN][1000 genomes]
rs3128050	0.86[ASN][1000 genomes]
rs3128052	0.86[ASN][1000 genomes]
rs3128055	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3128056	0.86[ASN][1000 genomes]
rs423113	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4334178	0.85[ASN][1000 genomes]
rs442612	0.84[ASN][1000 genomes]
rs443368	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4491382	0.84[ASN][1000 genomes]
rs5020678	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs5020679	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs5020680	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs5020681	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs66824322	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7139822	0.96[CEU][hapmap];0.87[CHB][hapmap]
rs728545	0.84[ASN][1000 genomes]
rs7320109	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7320115	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7323089	0.96[CEU][hapmap];0.87[CHB][hapmap]
rs7981757	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7982438	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7982706	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7983039	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7983391	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7987611	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7988008	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7989138	0.93[EUR][1000 genomes]
rs7994456	0.92[EUR][1000 genomes]
rs7995805	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8001256	0.93[EUR][1000 genomes]
rs9285236	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9317229	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs950159	0.96[CEU][hapmap];0.87[CHB][hapmap]
rs9528477	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9528478	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9528494	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9528495	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9528496	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9528497	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9528498	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9528499	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9528503	0.96[CEU][hapmap];0.86[CHB][hapmap]
rs9539442	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9539443	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9539452	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9539453	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9539454	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9539455	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9539456	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9539462	0.96[CEU][hapmap];0.87[CHB][hapmap]
rs9539467	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948810	chr13:62003256-62968196	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv900257	chr13:62782367-62907090	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv561893	chr13:62807570-62885877	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
4	nsv1038992	chr13:62827929-63369497	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv541795	chr13:62827929-63369497	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:62825200-62832600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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