Variant report

Variant	rs308654
Chromosome Location	chr13:62705197-62705198
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11840975	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs184280	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs308542	0.81[ASN][1000 genomes]
rs308645	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs308651	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs308652	0.81[ASN][1000 genomes]
rs308655	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs308666	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs308667	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs308668	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs308669	0.86[EUR][1000 genomes]
rs308670	0.86[EUR][1000 genomes]
rs308674	0.87[EUR][1000 genomes]
rs308675	0.86[EUR][1000 genomes]
rs308678	0.85[EUR][1000 genomes]
rs308684	0.80[ASN][1000 genomes]
rs308686	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948810	chr13:62003256-62968196	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv832630	chr13:62651865-62811428	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:62703400-62706000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr13:62704200-62705200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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