Variant report

Variant	rs308542
Chromosome Location	chr13:62727316-62727317
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs167433	0.84[ASN][1000 genomes]
rs167434	0.84[ASN][1000 genomes]
rs188671	0.84[ASN][1000 genomes]
rs2084267	0.93[ASN][1000 genomes]
rs308644	0.94[ASN][1000 genomes]
rs308646	0.94[ASN][1000 genomes]
rs308651	0.81[ASN][1000 genomes]
rs308652	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs308653	0.93[ASN][1000 genomes]
rs308654	0.81[ASN][1000 genomes]
rs308672	0.86[ASN][1000 genomes]
rs308673	0.86[ASN][1000 genomes]
rs308677	0.85[ASN][1000 genomes]
rs308679	0.84[ASN][1000 genomes]
rs308680	0.81[ASN][1000 genomes]
rs308683	0.84[ASN][1000 genomes]
rs308684	0.82[ASN][1000 genomes]
rs440322	0.94[ASN][1000 genomes]
rs73207795	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948810	chr13:62003256-62968196	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv832630	chr13:62651865-62811428	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv974021	chr13:62717340-62732532	ZNF genes & repeats Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:62727200-62727600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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