Variant report

Variant	rs440322
Chromosome Location	chr13:62731224-62731225
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs167433	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs167434	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs188671	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2084267	0.99[ASN][1000 genomes]
rs308542	0.94[ASN][1000 genomes]
rs308644	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs308646	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs308652	0.93[ASN][1000 genomes]
rs308653	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs308672	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs308673	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs308677	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs308679	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs308680	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs308683	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73207795	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948810	chr13:62003256-62968196	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv832630	chr13:62651865-62811428	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv974021	chr13:62717340-62732532	ZNF genes & repeats Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:62730600-62731800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links