Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1883375	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1883380	0.93[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs2076247	0.92[ASN][1000 genomes]
rs2143004	0.94[ASN][1000 genomes]
rs2425468	0.84[EUR][1000 genomes]
rs2425469	0.94[ASN][1000 genomes]
rs2425470	1.00[ASN][1000 genomes]
rs2425471	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2425472	0.94[ASN][1000 genomes]
rs2425473	0.93[ASN][1000 genomes]
rs2425475	0.94[ASN][1000 genomes]
rs2866942	0.95[ASN][1000 genomes]
rs2866947	1.00[ASN][1000 genomes]
rs3091600	0.94[ASN][1000 genomes]
rs3091875	0.99[ASN][1000 genomes]
rs3091889	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3091932	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3092252	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3092503	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3092614	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6124415	0.83[ASN][1000 genomes]
rs6130027	0.97[ASN][1000 genomes]
rs7263976	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv3381	chr20:39925326-40765696	Genic enhancers Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	esv2751913	chr20:40422982-41269321	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv532516	chr20:40451059-41097155	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:40712200-40725800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr20:40714600-40730000	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr20:40715800-40757600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
4	chr20:40720600-40722600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr20:40721400-40722800	Enhancers	Pancreatic Islets	Pancreatic Islet
6	chr20:40722400-40726000	Weak transcription	Brain Germinal Matrix	brain
7	chr20:40722400-40728400	Weak transcription	Pancreas	Pancrea

Quick Search: