Variant report

Variant	rs3094049
Chromosome Location	chr6:30359360-30359361
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs28994665	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3094034	0.86[EUR][1000 genomes]
rs3094035	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3094036	0.86[EUR][1000 genomes]
rs3094717	0.82[EUR][1000 genomes]
rs3130116	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3130363	1.00[AMR][1000 genomes]
rs3132616	0.82[EUR][1000 genomes]
rs3132619	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025667	chr6:30292845-30638066	Flanking Active TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	825 gene(s)	inside rSNPs	diseases
2	nsv969293	chr6:30348821-30368580	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3094049	HLA-C	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30359000-30359400	Enhancers	H9 Cell Line	embryonic stem cell
2	chr6:30359000-30359400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:30359000-30359800	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr6:30359000-30359800	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr6:30359000-30359800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr6:30359200-30359600	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
7	chr6:30359200-30359800	Enhancers	H1 Cell Line	embryonic stem cell
8	chr6:30359200-30359800	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr6:30359200-30359800	Enhancers	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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