Variant report
| Variant | rs3130363 |
|---|---|
| Chromosome Location | chr6:30340827-30340828 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000224486 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs28994665 | 1.00[AMR][1000 genomes] |
| rs3094035 | 1.00[AMR][1000 genomes] |
| rs3094049 | 1.00[AMR][1000 genomes] |
| rs3094054 | 0.86[EUR][1000 genomes] |
| rs3094056 | 0.86[EUR][1000 genomes] |
| rs3094057 | 0.86[EUR][1000 genomes] |
| rs3094058 | 0.86[EUR][1000 genomes] |
| rs3094064 | 0.85[EUR][1000 genomes] |
| rs3094066 | 0.82[EUR][1000 genomes] |
| rs3094067 | 0.85[EUR][1000 genomes] |
| rs3094069 | 0.82[EUR][1000 genomes] |
| rs3094078 | 0.82[EUR][1000 genomes] |
| rs3094620 | 0.86[EUR][1000 genomes] |
| rs3094624 | 0.86[EUR][1000 genomes] |
| rs3094625 | 0.86[EUR][1000 genomes] |
| rs3129815 | 0.86[EUR][1000 genomes] |
| rs3129830 | 0.82[EUR][1000 genomes] |
| rs3130350 | 0.86[EUR][1000 genomes] |
| rs3130351 | 0.86[EUR][1000 genomes] |
| rs3130352 | 0.86[EUR][1000 genomes] |
| rs3130353 | 0.86[EUR][1000 genomes] |
| rs3130355 | 0.85[EUR][1000 genomes] |
| rs3130364 | 0.86[EUR][1000 genomes] |
| rs3130377 | 0.86[EUR][1000 genomes] |
| rs3130380 | 0.82[EUR][1000 genomes] |
| rs3130399 | 0.82[EUR][1000 genomes] |
| rs3132647 | 0.86[EUR][1000 genomes] |
| rs3132648 | 0.86[EUR][1000 genomes] |
| rs7769152 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1025667 | chr6:30292845-30638066 | Flanking Active TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 825 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs3130363 | HLA-C | Cis_1M | lymphoblastoid | RTeQTL |
Chromatin state (count:0 , 50 per page) page:
| No data |
