Variant report

Variant	rs309666
Chromosome Location	chr5:29159438-29159439
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:29158096..29160564-chr5:29163373..29164995,2	K562	blood:

Variant related genes	Relation type
ENSG00000259786	Chromatin interaction

Extended variants
information (count: 109 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:101)

rs_ID	r²[population]
rs10037010	0.82[ASN][1000 genomes]
rs10037061	0.82[ASN][1000 genomes]
rs10038700	0.82[ASN][1000 genomes]
rs10039602	0.82[ASN][1000 genomes]
rs10039668	0.82[ASN][1000 genomes]
rs10039689	0.82[ASN][1000 genomes]
rs10039720	0.82[ASN][1000 genomes]
rs10040911	0.82[ASN][1000 genomes]
rs10042518	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10043330	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10045742	0.82[ASN][1000 genomes]
rs10050492	0.82[ASN][1000 genomes]
rs10056451	0.82[ASN][1000 genomes]
rs10056682	0.82[ASN][1000 genomes]
rs10057831	0.82[ASN][1000 genomes]
rs10057922	0.82[ASN][1000 genomes]
rs10058093	0.82[ASN][1000 genomes]
rs10058226	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10058284	0.82[ASN][1000 genomes]
rs10064605	0.82[ASN][1000 genomes]
rs10064724	0.82[ASN][1000 genomes]
rs10064739	0.82[ASN][1000 genomes]
rs10064857	0.82[ASN][1000 genomes]
rs10064882	0.82[ASN][1000 genomes]
rs10064929	0.82[ASN][1000 genomes]
rs10064947	0.82[ASN][1000 genomes]
rs10065134	0.82[ASN][1000 genomes]
rs10065602	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10066074	0.82[ASN][1000 genomes]
rs10066078	0.82[ASN][1000 genomes]
rs10066277	0.82[ASN][1000 genomes]
rs10068481	0.82[ASN][1000 genomes]
rs10071241	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10072095	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10072535	0.82[ASN][1000 genomes]
rs10072954	0.82[ASN][1000 genomes]
rs10072999	0.82[ASN][1000 genomes]
rs10073201	0.82[ASN][1000 genomes]
rs10074755	0.82[ASN][1000 genomes]
rs10079924	0.82[ASN][1000 genomes]
rs10080202	0.82[ASN][1000 genomes]
rs10440641	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10472145	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10472151	0.82[ASN][1000 genomes]
rs10472154	0.82[ASN][1000 genomes]
rs10472678	0.82[ASN][1000 genomes]
rs10472680	0.82[ASN][1000 genomes]
rs10472681	0.82[ASN][1000 genomes]
rs11742838	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12109506	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12697209	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13164231	0.82[ASN][1000 genomes]
rs13182294	0.82[ASN][1000 genomes]
rs13356879	0.82[ASN][1000 genomes]
rs13357238	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13359197	0.82[ASN][1000 genomes]
rs1478863	0.82[ASN][1000 genomes]
rs1587207	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28637428	0.82[ASN][1000 genomes]
rs309670	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34302105	0.82[ASN][1000 genomes]
rs34426391	0.82[ASN][1000 genomes]
rs34687289	0.82[ASN][1000 genomes]
rs34979719	0.82[ASN][1000 genomes]
rs35746880	0.82[ASN][1000 genomes]
rs3853229	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3886358	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4130798	0.82[ASN][1000 genomes]
rs4130799	0.82[ASN][1000 genomes]
rs4130800	0.82[ASN][1000 genomes]
rs4398647	0.82[ASN][1000 genomes]
rs4631192	0.82[ASN][1000 genomes]
rs62352828	0.82[ASN][1000 genomes]
rs62352850	0.82[ASN][1000 genomes]
rs62352851	0.82[ASN][1000 genomes]
rs6450669	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6450670	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6450673	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6866060	0.82[ASN][1000 genomes]
rs6873888	0.82[ASN][1000 genomes]
rs6885342	0.82[ASN][1000 genomes]
rs6899088	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7444084	0.82[ASN][1000 genomes]
rs7701404	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7714444	0.82[ASN][1000 genomes]
rs7714882	0.82[ASN][1000 genomes]
rs7715935	0.82[ASN][1000 genomes]
rs7722678	0.82[ASN][1000 genomes]
rs7731764	0.82[ASN][1000 genomes]
rs7732750	0.82[ASN][1000 genomes]
rs7732811	0.82[ASN][1000 genomes]
rs7733592	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7737230	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9292297	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9292307	0.82[ASN][1000 genomes]
rs9292311	0.82[ASN][1000 genomes]
rs9292312	0.82[ASN][1000 genomes]
rs9292314	0.82[ASN][1000 genomes]
rs9986176	0.82[ASN][1000 genomes]
rs9986231	0.82[ASN][1000 genomes]
rs9986285	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023990	chr5:28917253-29220447	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	esv3528360	chr5:29069255-29548659	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
3	esv3528361	chr5:29069255-29548659	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
4	nsv1022253	chr5:29076460-29195987	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
5	nsv1016603	chr5:29102713-29843965	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
6	nsv537712	chr5:29102713-29843965	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
7	nsv1030526	chr5:29125802-29204186	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
8	nsv964827	chr5:29138557-29198352	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:29154000-29162200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr5:29158400-29162200	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr5:29158600-29161800	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr5:29158800-29160000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr5:29159000-29161200	Weak transcription	Liver	Liver

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