Variant report

Variant	rs12697209
Chromosome Location	chr5:29128601-29128602
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 123 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:104)

rs_ID	r²[population]
rs10037010	0.81[ASN][1000 genomes]
rs10037061	0.81[ASN][1000 genomes]
rs10038700	0.81[ASN][1000 genomes]
rs10039602	0.81[ASN][1000 genomes]
rs10039668	0.81[ASN][1000 genomes]
rs10039689	0.81[ASN][1000 genomes]
rs10039720	0.81[ASN][1000 genomes]
rs10040911	0.81[ASN][1000 genomes]
rs10042518	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10043330	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10045742	0.81[ASN][1000 genomes]
rs10050492	0.81[ASN][1000 genomes]
rs10056451	0.81[ASN][1000 genomes]
rs10056682	0.81[ASN][1000 genomes]
rs10057831	0.81[ASN][1000 genomes]
rs10057922	0.81[ASN][1000 genomes]
rs10058093	0.81[ASN][1000 genomes]
rs10058226	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10058284	0.81[ASN][1000 genomes]
rs10064605	0.81[ASN][1000 genomes]
rs10064724	0.81[ASN][1000 genomes]
rs10064739	0.81[ASN][1000 genomes]
rs10064857	0.81[ASN][1000 genomes]
rs10064882	0.81[ASN][1000 genomes]
rs10064929	0.81[ASN][1000 genomes]
rs10064947	0.81[ASN][1000 genomes]
rs10065134	0.81[ASN][1000 genomes]
rs10065602	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10066074	0.81[ASN][1000 genomes]
rs10066078	0.81[ASN][1000 genomes]
rs10066277	0.81[ASN][1000 genomes]
rs10068481	0.81[ASN][1000 genomes]
rs10071241	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10072095	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10072535	0.81[ASN][1000 genomes]
rs10072954	0.81[ASN][1000 genomes]
rs10072999	0.81[ASN][1000 genomes]
rs10073201	0.81[ASN][1000 genomes]
rs10074755	0.81[ASN][1000 genomes]
rs10079924	0.81[ASN][1000 genomes]
rs10080202	0.81[ASN][1000 genomes]
rs10440641	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10472145	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10472151	0.81[ASN][1000 genomes]
rs10472154	0.81[ASN][1000 genomes]
rs10472678	0.81[ASN][1000 genomes]
rs10472680	0.81[ASN][1000 genomes]
rs10472681	0.81[ASN][1000 genomes]
rs11742838	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12109506	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13164231	0.81[ASN][1000 genomes]
rs13182294	0.81[ASN][1000 genomes]
rs13356879	0.81[ASN][1000 genomes]
rs13357238	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13359197	0.81[ASN][1000 genomes]
rs1478863	0.81[ASN][1000 genomes]
rs1587207	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28637428	0.81[ASN][1000 genomes]
rs309666	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs309670	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34302105	0.81[ASN][1000 genomes]
rs34426391	0.81[ASN][1000 genomes]
rs34687289	0.81[ASN][1000 genomes]
rs34979719	0.81[ASN][1000 genomes]
rs35746880	0.81[ASN][1000 genomes]
rs3853229	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3886358	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4130798	0.81[ASN][1000 genomes]
rs4130799	0.81[ASN][1000 genomes]
rs4130800	0.81[ASN][1000 genomes]
rs4374768	0.81[ASN][1000 genomes]
rs4398647	0.81[ASN][1000 genomes]
rs4631192	0.81[ASN][1000 genomes]
rs55882562	0.92[ASN][1000 genomes]
rs62352828	0.81[ASN][1000 genomes]
rs62352850	0.81[ASN][1000 genomes]
rs62352851	0.81[ASN][1000 genomes]
rs631844	0.89[ASN][1000 genomes]
rs6450669	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6450670	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6450673	0.81[ASN][1000 genomes]
rs6866060	0.81[ASN][1000 genomes]
rs6873888	0.81[ASN][1000 genomes]
rs6885342	0.81[ASN][1000 genomes]
rs6899088	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7444084	0.81[ASN][1000 genomes]
rs7701404	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7714444	0.81[ASN][1000 genomes]
rs7714882	0.81[ASN][1000 genomes]
rs7715935	0.81[ASN][1000 genomes]
rs7722678	0.81[ASN][1000 genomes]
rs7731764	0.81[ASN][1000 genomes]
rs7732750	0.81[ASN][1000 genomes]
rs7732811	0.81[ASN][1000 genomes]
rs7733592	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7737230	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9292297	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9292307	0.81[ASN][1000 genomes]
rs9292311	0.81[ASN][1000 genomes]
rs9292312	0.81[ASN][1000 genomes]
rs9292314	0.81[ASN][1000 genomes]
rs9986176	0.81[ASN][1000 genomes]
rs9986231	0.81[ASN][1000 genomes]
rs9986285	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880855	chr5:28786844-29129027	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1023990	chr5:28917253-29220447	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv597750	chr5:28936053-29145655	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv1024307	chr5:28936195-29145676	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1027037	chr5:28936195-29147837	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	nsv597751	chr5:28941373-29144972	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv1015334	chr5:28951390-29139719	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv537711	chr5:28951390-29139719	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv523085	chr5:28955799-29145655	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
10	nsv880921	chr5:28959648-29129027	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
11	nsv880987	chr5:29051880-29129027	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	esv3528360	chr5:29069255-29548659	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
13	esv3528361	chr5:29069255-29548659	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
14	nsv980623	chr5:29074785-29130590	Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
15	nsv1022253	chr5:29076460-29195987	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
16	esv3387003	chr5:29088244-29137649	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
17	nsv1016603	chr5:29102713-29843965	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
18	nsv537712	chr5:29102713-29843965	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
19	nsv1030526	chr5:29125802-29204186	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:29128600-29129000	Active TSS	Primary T helper memory cells from peripheral blood 2	blood

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