Variant report

Variant	rs3101500
Chromosome Location	chr6:107119304-107119305
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:107113408..107116233-chr6:107118216..107122010,4	K562	blood:
2	chr6:107076386..107078777-chr6:107117206..107120148,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000130347	Chromatin interaction
ENSG00000130348	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs3104042	0.82[EUR][1000 genomes]
rs3104043	0.82[EUR][1000 genomes]
rs3104044	0.82[EUR][1000 genomes]
rs3104045	0.82[EUR][1000 genomes]
rs3121430	0.82[EUR][1000 genomes]
rs3127656	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3804340	0.86[ASN][1000 genomes]
rs3804341	0.86[ASN][1000 genomes]
rs7759832	0.81[EUR][1000 genomes]
rs9486427	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532047	chr6:106591482-107143252	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:107078600-107125200	Weak transcription	Stomach Mucosa	stomach
2	chr6:107106600-107126200	Weak transcription	Psoas Muscle	Psoas
3	chr6:107111800-107122200	Weak transcription	A549	lung
4	chr6:107112000-107119800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr6:107112000-107121800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr6:107112800-107124200	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr6:107113800-107122200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:107114000-107125400	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr6:107114800-107120200	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr6:107115000-107119400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr6:107115200-107119600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr6:107115200-107119600	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr6:107115200-107119600	Weak transcription	Left Ventricle	heart
14	chr6:107115200-107119800	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr6:107115200-107120000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr6:107115200-107120400	Weak transcription	Fetal Lung	lung
17	chr6:107115400-107119600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr6:107115400-107120000	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr6:107115400-107120200	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr6:107115400-107123000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr6:107115600-107120800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr6:107116400-107119600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr6:107116600-107124200	Weak transcription	Primary T cells from cord blood	blood
24	chr6:107116800-107124800	Weak transcription	Primary B cells from peripheral blood	blood
25	chr6:107116800-107125000	Weak transcription	Primary B cells from cord blood	blood
26	chr6:107117600-107130800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links