Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:107128712..107130590-chr6:107191547..107193827,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11153008	1.00[CHB][hapmap]
rs12530128	1.00[CHB][hapmap]
rs2354554	0.97[EUR][1000 genomes]
rs3101500	0.82[EUR][1000 genomes]
rs3104042	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3104043	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3104044	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3104045	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3121429	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3121431	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3121432	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3804340	1.00[CHB][hapmap]
rs3804341	1.00[CHB][hapmap]
rs4945760	1.00[CHB][hapmap]
rs6903452	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7357031	1.00[CHB][hapmap]
rs7741951	0.83[AMR][1000 genomes]
rs7759832	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7759846	0.83[AMR][1000 genomes]
rs9486395	1.00[CHB][hapmap]
rs9486427	1.00[CHB][hapmap]
rs9486440	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532047	chr6:106591482-107143252	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:107117600-107130800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:107126000-107130600	Weak transcription	Primary B cells from cord blood	blood
3	chr6:107130400-107133200	Enhancers	Primary B cells from peripheral blood	blood

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