Variant report

Variant	rs6903452
Chromosome Location	chr6:107129691-107129692
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs2354554	0.86[EUR][1000 genomes]
rs3104042	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3104043	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3104044	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3104045	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3121430	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3121431	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3121432	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7741951	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7759832	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7759846	0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs9486440	0.91[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs9486441	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532047	chr6:106591482-107143252	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:107117600-107130800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:107126000-107130600	Weak transcription	Primary B cells from cord blood	blood
3	chr6:107126200-107130400	Weak transcription	Primary B cells from peripheral blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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