Variant report

Variant	rs310269
Chromosome Location	chr6:70295207-70295208
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10945183	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13206442	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs310259	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs310267	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs310268	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs310270	0.83[EUR][1000 genomes]
rs7762919	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9346313	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9346314	0.86[ASN][1000 genomes]
rs9360392	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9446142	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs310269	C6orf150	cis	cerebellum	SCAN

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:70292800-70296200	Enhancers	HSMM	muscle
2	chr6:70293600-70295800	Enhancers	HSMMtube	muscle
3	chr6:70293800-70295600	Enhancers	Colon Smooth Muscle	Colon
4	chr6:70294200-70295400	Enhancers	Primary hematopoietic stem cells	blood
5	chr6:70294200-70296200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr6:70294400-70295600	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr6:70294400-70295600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr6:70294400-70295600	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr6:70294400-70295600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr6:70294600-70295400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr6:70294600-70295400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr6:70294600-70295600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr6:70294600-70295600	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr6:70294600-70295600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr6:70294600-70295600	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr6:70294600-70295600	Flanking Active TSS	GM12878-XiMat	blood
17	chr6:70294600-70295800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr6:70294600-70296000	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr6:70294800-70295600	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr6:70294800-70295600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr6:70294800-70295600	Enhancers	Primary T cells fromperipheralblood	blood
22	chr6:70294800-70295600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
23	chr6:70294800-70295600	Enhancers	Primary T helper cells fromperipheralblood	blood
24	chr6:70294800-70295600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr6:70294800-70295600	Enhancers	Fetal Brain Male	brain
26	chr6:70294800-70295600	Enhancers	Fetal Muscle Leg	muscle
27	chr6:70294800-70295600	Enhancers	Dnd41	blood
28	chr6:70294800-70295800	Enhancers	Muscle Satellite Cultured Cells	--
29	chr6:70295000-70295400	Enhancers	Primary T cells from cord blood	blood
30	chr6:70295000-70295400	Enhancers	Primary T killer memory cells from peripheral blood	blood
31	chr6:70295000-70295400	Enhancers	Rectal Smooth Muscle	rectum
32	chr6:70295000-70295600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr6:70295000-70295600	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr6:70295000-70295600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr6:70295000-70295600	Enhancers	Primary B cells from peripheral blood	blood
36	chr6:70295000-70295600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
37	chr6:70295000-70295600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr6:70295000-70295600	Enhancers	Duodenum Smooth Muscle	Duodenum
39	chr6:70295000-70295600	Enhancers	Fetal Stomach	stomach
40	chr6:70295000-70295800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr6:70295200-70295600	Flanking Active TSS	Fetal Heart	heart
42	chr6:70295200-70295600	Enhancers	Stomach Smooth Muscle	stomach

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