Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:70310627..70312778-chr6:70312817..70314803,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10455693	0.84[AFR][1000 genomes]
rs10455694	0.84[AFR][1000 genomes]
rs10945183	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12196517	0.82[YRI][hapmap];0.84[AFR][1000 genomes]
rs12205972	0.84[AFR][1000 genomes]
rs13206442	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1812373	0.83[AFR][1000 genomes]
rs310259	0.85[EUR][1000 genomes]
rs310267	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs310268	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs310269	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs310270	0.81[EUR][1000 genomes]
rs34029814	0.84[AFR][1000 genomes]
rs34036103	0.84[AFR][1000 genomes]
rs56121698	0.84[AFR][1000 genomes]
rs6905260	0.84[AFR][1000 genomes]
rs6910099	0.93[YRI][hapmap];0.84[AFR][1000 genomes]
rs6924877	0.84[AFR][1000 genomes]
rs7762919	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9346313	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9346314	0.89[ASN][1000 genomes]
rs9446142	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022847	chr6:70300521-70337899	Enhancers Bivalent Enhancer Weak transcription Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs9360392	C6orf221	cis	parietal	SCAN
rs9360392	COL19A1	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:70311400-70314200	Weak transcription	Brain Substantia Nigra	brain
2	chr6:70312600-70314200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

Quick Search: