Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1045868	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10864032	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10864033	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11120070	0.87[ASN][1000 genomes]
rs11120076	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11120080	0.97[ASN][1000 genomes]
rs11120082	0.87[ASN][1000 genomes]
rs11120084	0.84[ASN][1000 genomes]
rs12026770	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1566248	0.85[ASN][1000 genomes]
rs3002284	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3738806	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4951477	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4951478	0.85[ASN][1000 genomes]
rs4951660	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6540774	0.86[ASN][1000 genomes]
rs6540776	0.85[ASN][1000 genomes]
rs6540777	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6671019	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6697921	0.85[ASN][1000 genomes]
rs7537285	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7540350	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008594	chr1:213110654-213236750	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs3104207	ANGEL2	Cis_1M	lymphoblastoid	RTeQTL
rs3104207	RPS6KC1	cis	Artery Tibial	GTEx
rs3104207	ANGEL2	cis	Esophagus Mucosa	GTEx

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:213189400-213198600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:213189800-213194000	Weak transcription	Spleen	Spleen
3	chr1:213192000-213192600	Weak transcription	K562	blood

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