Variant report

Variant	rs3104637
Chromosome Location	chr10:58855616-58855617
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10825986	0.82[EUR][1000 genomes]
rs10825988	0.80[EUR][1000 genomes]
rs10825989	0.80[EUR][1000 genomes]
rs10825990	0.82[EUR][1000 genomes]
rs10825991	0.80[EUR][1000 genomes]
rs1116023	0.80[EUR][1000 genomes]
rs1116024	0.82[EUR][1000 genomes]
rs1116026	0.80[EUR][1000 genomes]
rs12240722	0.82[EUR][1000 genomes]
rs12240853	0.82[EUR][1000 genomes]
rs12269721	0.80[EUR][1000 genomes]
rs1503903	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1503904	0.88[EUR][1000 genomes]
rs1503907	0.88[EUR][1000 genomes]
rs1875770	0.90[EUR][1000 genomes]
rs1915691	0.80[EUR][1000 genomes]
rs1960403	0.82[EUR][1000 genomes]
rs2036504	0.91[EUR][1000 genomes]
rs2036510	0.82[EUR][1000 genomes]
rs2174231	0.89[EUR][1000 genomes]
rs3104620	0.86[EUR][1000 genomes]
rs3104621	0.86[EUR][1000 genomes]
rs3104622	0.86[EUR][1000 genomes]
rs3104624	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3104627	0.88[EUR][1000 genomes]
rs3104629	0.87[EUR][1000 genomes]
rs3104636	0.91[EUR][1000 genomes]
rs3104669	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3104670	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3105300	0.85[EUR][1000 genomes]
rs3105303	0.85[EUR][1000 genomes]
rs3105306	0.88[EUR][1000 genomes]
rs3105307	0.88[EUR][1000 genomes]
rs3105309	0.88[EUR][1000 genomes]
rs3105310	0.88[EUR][1000 genomes]
rs35642791	0.82[EUR][1000 genomes]
rs4347303	0.82[EUR][1000 genomes]
rs4935689	0.82[EUR][1000 genomes]
rs6481256	0.82[EUR][1000 genomes]
rs6481257	0.82[EUR][1000 genomes]
rs6481258	0.80[EUR][1000 genomes]
rs7068379	0.80[EUR][1000 genomes]
rs7074723	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7075131	0.82[EUR][1000 genomes]
rs7080973	0.80[EUR][1000 genomes]
rs7081958	0.82[EUR][1000 genomes]
rs7083057	0.80[EUR][1000 genomes]
rs7089308	0.80[EUR][1000 genomes]
rs7094185	0.80[EUR][1000 genomes]
rs7097836	0.82[EUR][1000 genomes]
rs7909495	0.80[EUR][1000 genomes]
rs7912607	0.82[EUR][1000 genomes]
rs7915950	0.82[EUR][1000 genomes]
rs924792	0.86[EUR][1000 genomes]
rs983570	0.89[EUR][1000 genomes]
rs988162	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:30 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895513	chr10:58672533-58979792	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1053600	chr10:58730645-58881832	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv895515	chr10:58802422-58913651	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2757391	chr10:58822244-58948207	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv2759759	chr10:58822244-58948207	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1050372	chr10:58823425-58876194	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv540652	chr10:58823425-58876194	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv1054466	chr10:58829683-58871585	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv1043708	chr10:58830297-58865342	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv1037860	chr10:58830297-58871363	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
11	nsv895516	chr10:58836950-58884494	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv895517	chr10:58836950-58957774	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv6776	chr10:58839167-58870503	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
14	esv2760116	chr10:58843656-58861802	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
15	esv2764235	chr10:58843656-58871597	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
16	nsv895518	chr10:58843951-58874198	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
17	nsv895519	chr10:58843951-58905847	Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
18	nsv895520	chr10:58843951-58933549	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
19	nsv551106	chr10:58846575-58892275	ZNF genes & repeats Enhancers Strong transcription Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
20	esv2756345	chr10:58846594-59027194	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
21	nsv895521	chr10:58849853-58963458	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
22	esv2829927	chr10:58849853-58979792	Weak transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
23	nsv551107	chr10:58853784-58918899	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
24	nsv895522	chr10:58853784-58918899	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
25	nsv895523	chr10:58853784-58945720	Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
26	nsv895524	chr10:58853784-58953960	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
27	nsv895525	chr10:58853784-58963458	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
28	nsv895526	chr10:58853784-58970006	Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
29	nsv895527	chr10:58853784-58979792	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
30	nsv895528	chr10:58853784-58991581	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:58854000-58863600	Weak transcription	Right Atrium	heart
2	chr10:58854800-58856200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:58854800-58856400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell

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