Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs101927	0.84[AFR][1000 genomes]
rs12651542	0.87[EUR][1000 genomes]
rs1388988	0.82[EUR][1000 genomes]
rs16997797	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17008220	1.00[CHB][hapmap]
rs17831051	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs312492	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4833988	0.86[EUR][1000 genomes]
rs55697817	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56149912	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56194872	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58293561	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6534441	0.86[EUR][1000 genomes]
rs6534442	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6534443	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6534444	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6534445	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6844455	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6848373	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7670478	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7675285	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868977	chr4:124841128-125550637	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv879880	chr4:125174817-125494547	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv2760890	chr4:125273456-125466931	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv879881	chr4:125280852-125448288	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv521095	chr4:125439666-125444404	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125444400-125445400	Enhancers	Fetal Stomach	stomach

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