Variant report

Variant	rs55697817
Chromosome Location	chr4:125451962-125451963
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11946186	0.86[EUR][1000 genomes]
rs1509525	0.87[EUR][1000 genomes]
rs1567395	0.86[EUR][1000 genomes]
rs1567396	0.86[EUR][1000 genomes]
rs16997797	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17831051	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28548600	0.86[EUR][1000 genomes]
rs28733585	0.86[EUR][1000 genomes]
rs3106055	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs312492	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55698707	0.86[EUR][1000 genomes]
rs56149912	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56194872	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58293561	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58568869	0.86[EUR][1000 genomes]
rs59780240	0.86[EUR][1000 genomes]
rs6534442	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6534443	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6534444	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6534445	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6836758	0.86[EUR][1000 genomes]
rs6844455	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6846869	0.87[EUR][1000 genomes]
rs6848373	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6856045	0.86[EUR][1000 genomes]
rs6856467	0.86[EUR][1000 genomes]
rs7670478	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7670821	0.82[EUR][1000 genomes]
rs7675285	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9993116	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868977	chr4:124841128-125550637	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv879880	chr4:125174817-125494547	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv2760890	chr4:125273456-125466931	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125450800-125452200	Enhancers	NHDF-Ad	bronchial
2	chr4:125451000-125454400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr4:125451200-125452000	Flanking Active TSS	Liver	Liver
4	chr4:125451400-125452400	Enhancers	Fetal Intestine Large	intestine
5	chr4:125451600-125452400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr4:125451600-125452400	Enhancers	Fetal Intestine Small	intestine
7	chr4:125451800-125452000	Enhancers	HepG2	liver

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