Variant report
| Variant | rs7670821 |
|---|---|
| Chromosome Location | chr4:125469723-125469724 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs11946186 | 0.94[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs12651542 | 0.83[ASN][1000 genomes] |
| rs1509525 | 0.93[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs1567395 | 0.85[AFR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs1567396 | 0.85[AFR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs17831051 | 0.82[EUR][1000 genomes] |
| rs28548600 | 0.94[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs28733585 | 0.94[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs312492 | 0.83[EUR][1000 genomes] |
| rs4833988 | 0.83[ASN][1000 genomes] |
| rs55697817 | 0.82[EUR][1000 genomes] |
| rs55698707 | 0.94[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs56149912 | 0.82[EUR][1000 genomes] |
| rs56194872 | 0.80[EUR][1000 genomes] |
| rs58293561 | 0.82[EUR][1000 genomes] |
| rs58568869 | 0.94[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs59780240 | 0.94[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs6534441 | 0.82[ASN][1000 genomes] |
| rs6534442 | 0.82[EUR][1000 genomes] |
| rs6534443 | 0.82[EUR][1000 genomes] |
| rs6534444 | 0.82[EUR][1000 genomes] |
| rs6534445 | 0.82[EUR][1000 genomes] |
| rs6836758 | 0.94[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs6844455 | 0.82[EUR][1000 genomes] |
| rs6846869 | 0.93[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs6848373 | 0.82[EUR][1000 genomes] |
| rs6856045 | 0.94[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs6856467 | 0.94[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs7670478 | 0.82[EUR][1000 genomes] |
| rs7675285 | 0.81[EUR][1000 genomes] |
| rs9993116 | 0.94[EUR][1000 genomes];0.88[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv868977 | chr4:124841128-125550637 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| 2 | nsv879880 | chr4:125174817-125494547 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:125469200-125469800 | Enhancers | Fetal Kidney | kidney |
