Variant report

Variant	rs3106602
Chromosome Location	chr13:61671040-61671041
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1355959	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1355960	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1514543	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2203395	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2221987	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3121779	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs3121791	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3121793	0.84[AMR][1000 genomes]
rs6562151	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7981971	0.83[EUR][1000 genomes]
rs9317157	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9528288	0.83[EUR][1000 genomes]
rs9539011	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9539021	0.83[EUR][1000 genomes]
rs9539035	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832626	chr13:61545191-61698233	Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv832627	chr13:61642811-61829217	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases
3	esv3444432	chr13:61665252-61781081	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:61670600-61671200	Transcr. at gene 5' and 3'	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr13:61670800-61671800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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