Variant report

Variant	rs3121793
Chromosome Location	chr13:61663085-61663086
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1355959	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs1355960	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs1399310	0.92[AFR][1000 genomes]
rs1514543	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs1913556	0.92[AFR][1000 genomes]
rs2203395	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs2221987	0.89[AFR][1000 genomes]
rs3106602	0.84[AMR][1000 genomes]
rs3121789	0.92[AFR][1000 genomes]
rs3121791	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs3127304	0.86[AFR][1000 genomes]
rs7981971	0.83[AFR][1000 genomes]
rs9317157	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832626	chr13:61545191-61698233	Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv832627	chr13:61642811-61829217	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:61654600-61663800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr13:61659800-61668600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr13:61660200-61668600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr13:61660600-61663600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr13:61660600-61664000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr13:61662200-61664200	Active TSS	ES-I3 Cell Line	embryonic stem cell
7	chr13:61662600-61663800	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr13:61662600-61665400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr13:61662800-61668400	Weak transcription	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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