Variant report

Variant	rs3121789
Chromosome Location	chr13:61660182-61660183
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10507661	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10507662	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1355959	0.92[AFR][1000 genomes]
rs1355960	0.97[AFR][1000 genomes]
rs1399310	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1514543	0.97[AFR][1000 genomes]
rs17059292	0.86[EUR][1000 genomes]
rs17059306	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17059308	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17059315	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17059374	0.82[EUR][1000 genomes]
rs1913556	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2203395	0.93[AFR][1000 genomes]
rs2221987	0.84[AFR][1000 genomes]
rs3121791	0.97[AFR][1000 genomes]
rs3121793	0.92[AFR][1000 genomes]
rs4509905	0.83[EUR][1000 genomes]
rs73205840	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73205841	0.85[ASN][1000 genomes]
rs73205847	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73205850	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73205852	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73205854	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73205855	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73205856	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73205861	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73205865	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73205866	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73205870	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73205873	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73205874	1.00[ASN][1000 genomes]
rs73205877	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73205880	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73205890	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73205891	0.82[EUR][1000 genomes]
rs73205892	0.82[EUR][1000 genomes]
rs7981971	0.84[AFR][1000 genomes]
rs9317156	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9317157	0.89[AFR][1000 genomes]
rs9563858	0.83[EUR][1000 genomes]
rs9563859	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9563860	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9563861	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9563862	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9563863	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9563864	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9563865	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9563866	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9563867	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9570420	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9570423	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9570425	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9570426	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9570427	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9570429	0.86[EUR][1000 genomes]
rs9570431	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9570432	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9570433	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9570434	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9570438	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9570440	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9570444	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9570446	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9570451	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9570452	0.89[ASN][1000 genomes]
rs9570457	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9570459	0.89[ASN][1000 genomes]
rs9570460	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832626	chr13:61545191-61698233	Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv832627	chr13:61642811-61829217	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:61654600-61663800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr13:61655200-61662000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr13:61657000-61661000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr13:61658200-61660800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr13:61658200-61661000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr13:61658600-61660800	Enhancers	NHEK	skin
7	chr13:61659200-61660200	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr13:61659600-61660400	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr13:61659600-61660600	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr13:61659800-61660200	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr13:61659800-61660600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr13:61659800-61660600	Enhancers	Placenta Amnion	Placenta Amnion
13	chr13:61659800-61668600	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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