Variant report

Variant	rs17059374
Chromosome Location	chr13:61693408-61693409
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:61229131..61230781-chr13:61693406..61695295,2	MCF-7	breast:

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10507661	0.91[EUR][1000 genomes]
rs10507662	0.93[EUR][1000 genomes]
rs1399310	0.80[EUR][1000 genomes]
rs17059292	0.91[EUR][1000 genomes]
rs17059306	0.91[EUR][1000 genomes]
rs17059308	0.91[EUR][1000 genomes]
rs17059315	0.88[EUR][1000 genomes]
rs1913556	0.82[EUR][1000 genomes]
rs3121789	0.82[EUR][1000 genomes]
rs4509905	0.88[EUR][1000 genomes]
rs73205840	0.87[EUR][1000 genomes]
rs73205847	0.91[EUR][1000 genomes]
rs73205850	0.93[EUR][1000 genomes]
rs73205852	0.93[EUR][1000 genomes]
rs73205854	0.93[EUR][1000 genomes]
rs73205855	0.93[EUR][1000 genomes]
rs73205856	0.93[EUR][1000 genomes]
rs73205861	0.93[EUR][1000 genomes]
rs73205865	0.93[EUR][1000 genomes]
rs73205866	0.93[EUR][1000 genomes]
rs73205870	0.93[EUR][1000 genomes]
rs73205873	0.93[EUR][1000 genomes]
rs73205877	0.93[EUR][1000 genomes]
rs73205880	0.93[EUR][1000 genomes]
rs73205890	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73205891	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73205892	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73205893	1.00[ASN][1000 genomes]
rs73205898	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73208210	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73208223	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73208228	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73208231	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73208233	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73208235	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73208238	0.91[AMR][1000 genomes]
rs73208241	0.91[AMR][1000 genomes]
rs9317156	0.93[EUR][1000 genomes]
rs9563858	0.88[EUR][1000 genomes]
rs9563859	0.91[EUR][1000 genomes]
rs9563860	0.91[EUR][1000 genomes]
rs9563861	0.91[EUR][1000 genomes]
rs9563862	0.88[EUR][1000 genomes]
rs9563863	0.91[EUR][1000 genomes]
rs9563864	0.93[EUR][1000 genomes]
rs9563865	0.93[EUR][1000 genomes]
rs9563866	0.93[EUR][1000 genomes]
rs9563867	0.93[EUR][1000 genomes]
rs9570420	0.86[EUR][1000 genomes]
rs9570423	0.86[EUR][1000 genomes]
rs9570425	0.91[EUR][1000 genomes]
rs9570426	0.91[EUR][1000 genomes]
rs9570427	0.91[EUR][1000 genomes]
rs9570429	0.91[EUR][1000 genomes]
rs9570431	0.91[EUR][1000 genomes]
rs9570432	0.91[EUR][1000 genomes]
rs9570433	0.88[EUR][1000 genomes]
rs9570434	0.91[EUR][1000 genomes]
rs9570438	0.91[EUR][1000 genomes]
rs9570440	0.93[EUR][1000 genomes]
rs9570444	0.93[EUR][1000 genomes]
rs9570446	0.93[EUR][1000 genomes]
rs9570451	0.89[EUR][1000 genomes]
rs9570457	0.98[EUR][1000 genomes]
rs9570460	1.00[AFR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832626	chr13:61545191-61698233	Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv832627	chr13:61642811-61829217	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases
3	esv3444432	chr13:61665252-61781081	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:61687000-61694400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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