Variant report

Variant	rs73208223
Chromosome Location	chr13:61736926-61736927
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10507661	0.81[EUR][1000 genomes]
rs10507662	0.83[EUR][1000 genomes]
rs17059292	0.81[EUR][1000 genomes]
rs17059306	0.81[EUR][1000 genomes]
rs17059308	0.81[EUR][1000 genomes]
rs17059374	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs68086859	0.82[EUR][1000 genomes]
rs73205847	0.81[EUR][1000 genomes]
rs73205850	0.83[EUR][1000 genomes]
rs73205852	0.83[EUR][1000 genomes]
rs73205854	0.83[EUR][1000 genomes]
rs73205855	0.83[EUR][1000 genomes]
rs73205856	0.83[EUR][1000 genomes]
rs73205861	0.83[EUR][1000 genomes]
rs73205865	0.83[EUR][1000 genomes]
rs73205866	0.83[EUR][1000 genomes]
rs73205870	0.83[EUR][1000 genomes]
rs73205873	0.83[EUR][1000 genomes]
rs73205877	0.83[EUR][1000 genomes]
rs73205880	0.83[EUR][1000 genomes]
rs73205890	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73205891	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73205892	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73205893	0.87[ASN][1000 genomes]
rs73205898	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73208210	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73208228	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73208231	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73208233	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73208235	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73208238	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73208241	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73208251	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9317156	0.83[EUR][1000 genomes]
rs9563859	0.81[EUR][1000 genomes]
rs9563860	0.81[EUR][1000 genomes]
rs9563861	0.81[EUR][1000 genomes]
rs9563863	0.81[EUR][1000 genomes]
rs9563864	0.83[EUR][1000 genomes]
rs9563865	0.83[EUR][1000 genomes]
rs9563866	0.83[EUR][1000 genomes]
rs9563867	0.83[EUR][1000 genomes]
rs9570425	0.81[EUR][1000 genomes]
rs9570426	0.81[EUR][1000 genomes]
rs9570427	0.81[EUR][1000 genomes]
rs9570429	0.81[EUR][1000 genomes]
rs9570431	0.81[EUR][1000 genomes]
rs9570432	0.81[EUR][1000 genomes]
rs9570434	0.81[EUR][1000 genomes]
rs9570438	0.81[EUR][1000 genomes]
rs9570440	0.83[EUR][1000 genomes]
rs9570444	0.83[EUR][1000 genomes]
rs9570446	0.83[EUR][1000 genomes]
rs9570457	0.87[EUR][1000 genomes]
rs9570460	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832627	chr13:61642811-61829217	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases
2	esv3444432	chr13:61665252-61781081	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases
3	nsv900243	chr13:61711163-61799269	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:61735800-61737400	Enhancers	Rectal Smooth Muscle	rectum
2	chr13:61736000-61737200	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr13:61736000-61738200	Enhancers	Colon Smooth Muscle	Colon
4	chr13:61736200-61737400	Enhancers	Fetal Heart	heart
5	chr13:61736400-61737200	Enhancers	Stomach Smooth Muscle	stomach

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