Variant report

Variant	rs73208238
Chromosome Location	chr13:61754874-61754875
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs17059374	0.91[AMR][1000 genomes]
rs68086859	0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73205890	0.91[AMR][1000 genomes]
rs73205891	0.91[AMR][1000 genomes]
rs73205892	0.91[AMR][1000 genomes]
rs73205898	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73208210	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73208223	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73208228	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73208231	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73208233	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73208235	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73208241	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73208250	0.95[ASN][1000 genomes]
rs73208251	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73210508	0.90[EUR][1000 genomes]
rs73210509	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832627	chr13:61642811-61829217	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases
2	esv3444432	chr13:61665252-61781081	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases
3	nsv900243	chr13:61711163-61799269	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:61753000-61755200	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr13:61753600-61755000	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr13:61753600-61755000	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr13:61753600-61755000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr13:61753600-61755000	Enhancers	Rectal Smooth Muscle	rectum
6	chr13:61753800-61755000	Enhancers	Fetal Kidney	kidney
7	chr13:61753800-61759200	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr13:61754000-61755000	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr13:61754000-61755000	Enhancers	Aorta	Aorta
10	chr13:61754200-61755400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
11	chr13:61754400-61755000	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr13:61754400-61755000	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr13:61754400-61755000	Enhancers	Colon Smooth Muscle	Colon
14	chr13:61754400-61755000	Enhancers	Fetal Stomach	stomach
15	chr13:61754800-61755400	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr13:61754800-61757200	Weak transcription	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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