Variant report

Variant	rs4509905
Chromosome Location	chr13:61603054-61603055
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10507661	0.92[EUR][1000 genomes]
rs10507662	0.94[EUR][1000 genomes]
rs1399310	0.80[EUR][1000 genomes]
rs17059284	0.82[ASN][1000 genomes]
rs17059292	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17059306	0.96[EUR][1000 genomes]
rs17059308	0.96[EUR][1000 genomes]
rs17059315	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17059374	0.88[EUR][1000 genomes]
rs1849756	0.81[EUR][1000 genomes]
rs1913556	0.83[EUR][1000 genomes]
rs3121789	0.83[EUR][1000 genomes]
rs4506788	0.81[EUR][1000 genomes]
rs73205840	0.92[EUR][1000 genomes]
rs73205841	0.82[EUR][1000 genomes]
rs73205847	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73205850	0.94[EUR][1000 genomes]
rs73205852	0.94[EUR][1000 genomes]
rs73205854	0.94[EUR][1000 genomes]
rs73205855	0.94[EUR][1000 genomes]
rs73205856	0.94[EUR][1000 genomes]
rs73205861	0.94[EUR][1000 genomes]
rs73205865	0.94[EUR][1000 genomes]
rs73205866	0.94[EUR][1000 genomes]
rs73205870	0.94[EUR][1000 genomes]
rs73205873	0.94[EUR][1000 genomes]
rs73205877	0.94[EUR][1000 genomes]
rs73205880	0.94[EUR][1000 genomes]
rs73205890	0.88[EUR][1000 genomes]
rs73205891	0.88[EUR][1000 genomes]
rs73205892	0.88[EUR][1000 genomes]
rs73205898	0.83[EUR][1000 genomes]
rs9317156	0.94[EUR][1000 genomes]
rs9563858	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9563859	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9563860	0.96[EUR][1000 genomes]
rs9563861	0.96[EUR][1000 genomes]
rs9563862	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9563863	0.96[EUR][1000 genomes]
rs9563864	0.94[EUR][1000 genomes]
rs9563865	0.94[EUR][1000 genomes]
rs9563866	0.94[EUR][1000 genomes]
rs9563867	0.94[EUR][1000 genomes]
rs9570420	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9570421	0.80[EUR][1000 genomes]
rs9570422	0.81[EUR][1000 genomes]
rs9570423	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9570424	0.81[EUR][1000 genomes]
rs9570425	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9570426	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9570427	0.96[EUR][1000 genomes]
rs9570429	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9570431	0.96[EUR][1000 genomes]
rs9570432	0.96[EUR][1000 genomes]
rs9570433	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9570434	0.96[EUR][1000 genomes]
rs9570438	0.96[EUR][1000 genomes]
rs9570440	0.94[EUR][1000 genomes]
rs9570444	0.94[EUR][1000 genomes]
rs9570446	0.94[EUR][1000 genomes]
rs9570451	0.90[EUR][1000 genomes]
rs9570457	0.90[EUR][1000 genomes]
rs9570460	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832626	chr13:61545191-61698233	Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:61599800-61604200	Weak transcription	Fetal Heart	heart
2	chr13:61602400-61605600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr13:61602800-61603400	Enhancers	Brain Angular Gyrus	brain
4	chr13:61602800-61603400	Enhancers	Brain Anterior Caudate	brain
5	chr13:61602800-61603400	Enhancers	Brain Cingulate Gyrus	brain
6	chr13:61602800-61603600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr13:61602800-61603600	Enhancers	Brain Inferior Temporal Lobe	brain
8	chr13:61603000-61603400	Enhancers	Brain Substantia Nigra	brain
9	chr13:61603000-61603600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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