Variant report

Variant	rs17059284
Chromosome Location	chr13:61618898-61618899
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs17059254	0.84[AFR][1000 genomes]
rs17059287	0.90[AFR][1000 genomes]
rs17059292	0.94[ASN][1000 genomes]
rs28393587	0.89[EUR][1000 genomes]
rs4454846	0.90[EUR][1000 genomes]
rs4509905	0.82[ASN][1000 genomes]
rs4539490	0.90[EUR][1000 genomes]
rs4555039	0.90[EUR][1000 genomes]
rs58859486	0.89[EUR][1000 genomes]
rs59732414	0.89[EUR][1000 genomes]
rs60292167	0.90[EUR][1000 genomes]
rs66550909	0.89[EUR][1000 genomes]
rs67255326	0.89[EUR][1000 genomes]
rs73559806	0.81[AFR][1000 genomes]
rs73559830	0.90[AFR][1000 genomes]
rs73559837	0.90[AFR][1000 genomes]
rs73561851	0.89[EUR][1000 genomes]
rs7988647	0.88[AFR][1000 genomes]
rs9528284	0.90[EUR][1000 genomes]
rs9528286	0.90[EUR][1000 genomes]
rs9528287	0.90[EUR][1000 genomes]
rs9539016	0.90[AFR][1000 genomes]
rs9539022	0.90[EUR][1000 genomes]
rs9539023	0.89[EUR][1000 genomes]
rs9539024	0.89[EUR][1000 genomes]
rs9539026	0.89[EUR][1000 genomes]
rs9539027	0.89[EUR][1000 genomes]
rs9539028	0.89[EUR][1000 genomes]
rs9539029	0.89[EUR][1000 genomes]
rs9539030	0.89[EUR][1000 genomes]
rs9539031	0.89[EUR][1000 genomes]
rs9563858	0.94[ASN][1000 genomes]
rs9570428	0.91[EUR][1000 genomes]
rs9570429	0.94[ASN][1000 genomes]
rs9570441	0.89[EUR][1000 genomes]
rs963545	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832626	chr13:61545191-61698233	Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17059284	FHL1	trans	lymphoblastoid	seeQTL

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:61603600-61620400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr13:61614800-61619400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr13:61617800-61619600	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr13:61618600-61619000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr13:61618800-61619200	Enhancers	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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