Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11840558	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17059254	0.85[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs17059284	0.81[AFR][1000 genomes]
rs17059287	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7318756	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73558000	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73559830	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73559837	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7988647	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7996351	0.82[EUR][1000 genomes]
rs9528283	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9528285	0.89[EUR][1000 genomes]
rs9539009	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9539010	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9539012	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9539013	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9539016	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9539034	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9570417	0.83[EUR][1000 genomes]
rs9570419	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832626	chr13:61545191-61698233	Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:61598200-61602800	Weak transcription	Brain Anterior Caudate	brain
2	chr13:61598200-61603000	Weak transcription	Brain Substantia Nigra	brain
3	chr13:61598800-61602800	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr13:61599000-61602800	Weak transcription	Brain Cingulate Gyrus	brain
5	chr13:61599800-61604200	Weak transcription	Fetal Heart	heart
6	chr13:61602400-61605600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

Quick Search: