Variant report

Variant	rs9528285
Chromosome Location	chr13:61636208-61636209
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs11840558	0.89[EUR][1000 genomes]
rs1399308	0.87[ASN][1000 genomes]
rs1514544	0.91[ASN][1000 genomes]
rs17059287	0.88[EUR][1000 genomes]
rs1849757	0.87[ASN][1000 genomes]
rs28393587	0.95[AFR][1000 genomes]
rs4454846	0.97[AFR][1000 genomes]
rs4539490	0.96[AFR][1000 genomes]
rs4555039	0.97[AFR][1000 genomes]
rs4628851	0.83[ASN][1000 genomes]
rs58859486	0.93[AFR][1000 genomes]
rs59732414	0.95[AFR][1000 genomes]
rs60292167	0.97[AFR][1000 genomes]
rs66550909	0.96[AFR][1000 genomes]
rs67255326	0.95[AFR][1000 genomes]
rs7318756	0.84[EUR][1000 genomes]
rs73558000	0.89[EUR][1000 genomes]
rs73559806	0.89[EUR][1000 genomes]
rs73559809	0.87[ASN][1000 genomes]
rs73559830	0.90[EUR][1000 genomes]
rs73559837	0.90[EUR][1000 genomes]
rs73561851	0.96[AFR][1000 genomes]
rs7988647	0.89[EUR][1000 genomes]
rs7990636	0.96[ASN][1000 genomes]
rs7996351	0.84[EUR][1000 genomes]
rs9528283	0.91[EUR][1000 genomes]
rs9528284	0.97[AFR][1000 genomes]
rs9528286	0.97[AFR][1000 genomes]
rs9528287	0.97[AFR][1000 genomes]
rs9539009	0.84[EUR][1000 genomes]
rs9539010	0.84[EUR][1000 genomes]
rs9539012	0.89[EUR][1000 genomes]
rs9539013	0.89[EUR][1000 genomes]
rs9539016	0.90[EUR][1000 genomes]
rs9539022	0.97[AFR][1000 genomes]
rs9539023	0.97[AFR][1000 genomes]
rs9539024	0.95[AFR][1000 genomes]
rs9539026	0.96[AFR][1000 genomes]
rs9539027	0.93[AFR][1000 genomes]
rs9539028	0.95[AFR][1000 genomes]
rs9539029	0.96[AFR][1000 genomes]
rs9539030	0.93[AFR][1000 genomes]
rs9539031	0.96[AFR][1000 genomes]
rs9539034	0.88[EUR][1000 genomes]
rs9570417	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9570419	0.84[EUR][1000 genomes]
rs9570428	0.84[AFR][1000 genomes]
rs9570441	0.96[AFR][1000 genomes]
rs963545	0.96[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832626	chr13:61545191-61698233	Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:61622400-61642000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr13:61634000-61638800	Weak transcription	H9 Cell Line	embryonic stem cell

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