Variant report
| Variant | rs1849756 |
|---|---|
| Chromosome Location | chr13:61610870-61610871 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:36)
| rs_ID | r2[population] |
|---|---|
| rs17059315 | 0.81[EUR][1000 genomes] |
| rs28393587 | 0.87[ASN][1000 genomes] |
| rs4454846 | 0.91[ASN][1000 genomes] |
| rs4506788 | 0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4509905 | 0.81[EUR][1000 genomes] |
| rs4539490 | 0.91[ASN][1000 genomes] |
| rs4555039 | 0.91[ASN][1000 genomes] |
| rs58859486 | 0.91[ASN][1000 genomes] |
| rs59732414 | 0.91[ASN][1000 genomes] |
| rs60292167 | 0.91[ASN][1000 genomes] |
| rs66550909 | 0.91[ASN][1000 genomes] |
| rs67255326 | 0.91[ASN][1000 genomes] |
| rs73205836 | 0.83[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs73561851 | 0.91[ASN][1000 genomes] |
| rs9528284 | 0.91[ASN][1000 genomes] |
| rs9528286 | 0.91[ASN][1000 genomes] |
| rs9528287 | 0.91[ASN][1000 genomes] |
| rs9539022 | 0.91[ASN][1000 genomes] |
| rs9539023 | 0.91[ASN][1000 genomes] |
| rs9539024 | 0.87[ASN][1000 genomes] |
| rs9539026 | 0.91[ASN][1000 genomes] |
| rs9539027 | 0.91[ASN][1000 genomes] |
| rs9539028 | 0.90[ASN][1000 genomes] |
| rs9539029 | 0.89[ASN][1000 genomes] |
| rs9539030 | 0.91[ASN][1000 genomes] |
| rs9539031 | 0.91[ASN][1000 genomes] |
| rs9563858 | 0.81[EUR][1000 genomes] |
| rs9563862 | 0.81[EUR][1000 genomes] |
| rs9570420 | 0.83[EUR][1000 genomes] |
| rs9570421 | 0.93[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs9570422 | 0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9570423 | 0.83[EUR][1000 genomes] |
| rs9570424 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9570433 | 0.81[EUR][1000 genomes] |
| rs9570441 | 0.91[ASN][1000 genomes] |
| rs963545 | 0.91[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832626 | chr13:61545191-61698233 | Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:61603600-61620400 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
| 2 | chr13:61605600-61617000 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
