Variant report

Variant	rs73205836
Chromosome Location	chr13:61613900-61613901
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10507662	0.80[EUR][1000 genomes]
rs1399308	0.85[AFR][1000 genomes]
rs17059292	0.82[EUR][1000 genomes]
rs17059306	0.82[EUR][1000 genomes]
rs17059308	0.82[EUR][1000 genomes]
rs1849756	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1849757	0.90[AFR][1000 genomes]
rs4506788	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4628851	0.90[AFR][1000 genomes]
rs73205850	0.80[EUR][1000 genomes]
rs73205852	0.80[EUR][1000 genomes]
rs73205854	0.80[EUR][1000 genomes]
rs73205855	0.80[EUR][1000 genomes]
rs73205856	0.80[EUR][1000 genomes]
rs73205861	0.80[EUR][1000 genomes]
rs73205865	0.80[EUR][1000 genomes]
rs73205866	0.80[EUR][1000 genomes]
rs73205870	0.80[EUR][1000 genomes]
rs73205873	0.80[EUR][1000 genomes]
rs73205877	0.80[EUR][1000 genomes]
rs73205880	0.80[EUR][1000 genomes]
rs9317156	0.80[EUR][1000 genomes]
rs9563859	0.82[EUR][1000 genomes]
rs9563860	0.82[EUR][1000 genomes]
rs9563861	0.82[EUR][1000 genomes]
rs9563863	0.82[EUR][1000 genomes]
rs9563864	0.80[EUR][1000 genomes]
rs9563865	0.80[EUR][1000 genomes]
rs9563866	0.80[EUR][1000 genomes]
rs9563867	0.80[EUR][1000 genomes]
rs9570421	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9570422	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9570424	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9570425	0.82[EUR][1000 genomes]
rs9570426	0.82[EUR][1000 genomes]
rs9570427	0.82[EUR][1000 genomes]
rs9570428	0.95[ASN][1000 genomes]
rs9570429	0.82[EUR][1000 genomes]
rs9570431	0.82[EUR][1000 genomes]
rs9570432	0.82[EUR][1000 genomes]
rs9570434	0.82[EUR][1000 genomes]
rs9570438	0.82[EUR][1000 genomes]
rs9570440	0.80[EUR][1000 genomes]
rs9570444	0.80[EUR][1000 genomes]
rs9570446	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832626	chr13:61545191-61698233	Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:61603600-61620400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr13:61605600-61617000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links