Variant report

Variant	rs3108864
Chromosome Location	chr8:110673564-110673565
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:110668165..110670154-chr8:110671469..110674200,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10090145	0.86[JPT][hapmap]
rs10505131	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10505132	0.94[CEU][hapmap];0.91[JPT][hapmap];0.92[EUR][1000 genomes]
rs11986510	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11994796	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11998387	0.86[JPT][hapmap]
rs13256586	0.91[EUR][1000 genomes]
rs13268243	0.94[CEU][hapmap];0.85[GIH][hapmap];0.95[JPT][hapmap];0.82[MEX][hapmap];0.88[TSI][hapmap];0.92[EUR][1000 genomes]
rs1573853	0.86[JPT][hapmap]
rs2702	0.94[CEU][hapmap];0.85[JPT][hapmap];0.92[EUR][1000 genomes]
rs3108829	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3108832	0.87[EUR][1000 genomes]
rs3108837	0.94[CEU][hapmap];0.85[GIH][hapmap];0.91[JPT][hapmap];0.83[TSI][hapmap];0.85[EUR][1000 genomes]
rs3108840	0.80[CEU][hapmap];0.91[JPT][hapmap]
rs3108853	0.92[EUR][1000 genomes]
rs3108854	0.92[EUR][1000 genomes]
rs3108862	0.92[EUR][1000 genomes]
rs3108863	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3108865	0.92[EUR][1000 genomes]
rs3108869	0.91[EUR][1000 genomes]
rs3133926	0.87[EUR][1000 genomes]
rs3133927	0.87[EUR][1000 genomes]
rs3133935	0.91[JPT][hapmap]
rs3133936	0.80[CEU][hapmap];0.91[JPT][hapmap]
rs3134314	0.94[JPT][hapmap]
rs3134317	0.92[EUR][1000 genomes]
rs3134319	0.92[EUR][1000 genomes]
rs3134325	0.87[EUR][1000 genomes]
rs3134331	0.85[EUR][1000 genomes]
rs6469275	0.94[CEU][hapmap];0.85[GIH][hapmap];0.86[JPT][hapmap];0.82[MEX][hapmap];0.88[TSI][hapmap];0.92[EUR][1000 genomes]
rs6985646	0.92[EUR][1000 genomes]
rs7008447	0.94[CEU][hapmap];0.82[GIH][hapmap];0.86[JPT][hapmap];0.82[MEX][hapmap];0.88[TSI][hapmap];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1849702	chr8:110594148-110683804	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs3108864	SYBU	cis	parietal	SCAN
rs3108864	PKHD1L1	cis	lymphoblastoid	seeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:110670400-110676800	Weak transcription	Fetal Brain Male	brain
2	chr8:110670800-110678200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr8:110672000-110680200	Weak transcription	Cortex derived primary cultured neurospheres	brain

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