Variant report

Variant	rs3110153
Chromosome Location	chr8:60054584-60054585
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs3110137	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs3110138	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs3110140	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3110142	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3110145	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3110147	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3110149	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3122647	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3122648	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3122651	0.91[ASN][1000 genomes]
rs3122657	0.81[EUR][1000 genomes]
rs3122661	0.83[EUR][1000 genomes]
rs3122691	0.81[EUR][1000 genomes]
rs379771	0.91[ASN][1000 genomes]
rs392450	0.89[ASN][1000 genomes]
rs401139	0.91[ASN][1000 genomes]
rs407261	0.91[ASN][1000 genomes]
rs426824	0.91[ASN][1000 genomes]
rs449224	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831327	chr8:60008412-60159152	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60053600-60056800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr8:60054200-60055000	Enhancers	Gastric	stomach
3	chr8:60054200-60056200	Enhancers	Dnd41	blood
4	chr8:60054400-60055000	Active TSS	Primary T regulatory cells fromperipheralblood	blood
5	chr8:60054400-60055000	Enhancers	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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