Variant report

Variant	rs3122691
Chromosome Location	chr8:60098543-60098544
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs3110122	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3110123	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3110124	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3110128	0.81[ASN][1000 genomes]
rs3110129	0.81[ASN][1000 genomes]
rs3110132	0.96[ASN][1000 genomes]
rs3110133	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3110153	0.81[EUR][1000 genomes]
rs3122647	1.00[CEU][hapmap]
rs3122648	0.94[CEU][hapmap]
rs3122657	0.85[AFR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3122661	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3122662	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3122693	0.95[ASN][1000 genomes]
rs3122694	0.88[ASN][1000 genomes]
rs7006620	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831327	chr8:60008412-60159152	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv831328	chr8:60062971-60288276	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs3122691	TGS1	cis	cerebellum	SCAN
rs3122691	C14orf148	trans	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60098400-60098800	Weak transcription	Dnd41	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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