Variant report

Variant	rs3110466
Chromosome Location	chr8:104816254-104816255
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:104814198..104817108-chr8:104820828..104822548,2	K562	blood:

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10100545	0.94[ASN][1000 genomes]
rs10102639	0.94[ASN][1000 genomes]
rs1116622	0.83[ASN][1000 genomes]
rs1116623	0.83[ASN][1000 genomes]
rs1176668	0.82[ASN][1000 genomes]
rs1176672	0.81[ASN][1000 genomes]
rs1176675	0.83[ASN][1000 genomes]
rs1176676	0.83[ASN][1000 genomes]
rs1176678	0.83[ASN][1000 genomes]
rs1176681	0.94[ASN][1000 genomes]
rs1176682	0.94[ASN][1000 genomes]
rs11776873	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11784781	0.81[ASN][1000 genomes]
rs12114518	0.82[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs12114906	0.81[ASN][1000 genomes]
rs1304378	0.81[ASN][1000 genomes]
rs13251060	0.81[ASN][1000 genomes]
rs13258713	0.84[ASN][1000 genomes]
rs13259052	0.83[ASN][1000 genomes]
rs13261271	0.83[ASN][1000 genomes]
rs13262019	0.81[ASN][1000 genomes]
rs13264010	0.81[ASN][1000 genomes]
rs13265186	0.81[ASN][1000 genomes]
rs13268881	1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap]
rs13270856	0.95[ASN][1000 genomes]
rs13278444	0.84[ASN][1000 genomes]
rs1390847	1.00[ASN][1000 genomes]
rs1426293	0.81[ASN][1000 genomes]
rs1426295	0.81[ASN][1000 genomes]
rs1593501	0.85[ASN][1000 genomes]
rs2029934	0.84[ASN][1000 genomes]
rs2554733	0.85[ASN][1000 genomes]
rs3104249	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3104251	1.00[ASN][1000 genomes]
rs3104253	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3107464	0.95[ASN][1000 genomes]
rs3107465	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3107471	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3110455	0.94[ASN][1000 genomes]
rs3110456	0.94[ASN][1000 genomes]
rs3110458	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3110459	0.94[ASN][1000 genomes]
rs3110460	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3110473	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3110474	0.94[ASN][1000 genomes]
rs35761468	0.81[ASN][1000 genomes]
rs35964420	0.81[ASN][1000 genomes]
rs58480013	0.89[ASN][1000 genomes]
rs62527103	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62527116	0.83[ASN][1000 genomes]
rs62527117	0.83[ASN][1000 genomes]
rs62527123	0.81[ASN][1000 genomes]
rs7004037	0.81[ASN][1000 genomes]
rs72681344	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7815614	0.81[ASN][1000 genomes]
rs7826043	0.84[ASN][1000 genomes]
rs7837796	0.84[ASN][1000 genomes]
rs924163	0.94[ASN][1000 genomes]
rs924165	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429931	chr8:104097396-104878014	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
2	nsv1020476	chr8:104312212-104924482	Genic enhancers Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	nsv539704	chr8:104312212-104924482	Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	nsv1023048	chr8:104355188-104872701	Flanking Active TSS Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
5	nsv539705	chr8:104355188-104872701	ZNF genes & repeats Enhancers Strong transcription Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
6	nsv1021345	chr8:104361854-104879684	Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
7	nsv1032085	chr8:104362187-104878345	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
8	esv2752692	chr8:104520824-105123824	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
9	nsv1016387	chr8:104578389-104931853	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv1031195	chr8:104601231-105194208	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:104805800-104858600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:104812400-104831200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr8:104815800-104816600	Enhancers	Fetal Intestine Small	intestine
4	chr8:104815800-104816800	Enhancers	Fetal Intestine Large	intestine

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