Variant report

Variant	rs924163
Chromosome Location	chr8:104885599-104885600
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10100545	0.95[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10102639	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10106745	0.86[AMR][1000 genomes]
rs1116622	0.91[AMR][1000 genomes]
rs1116623	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs1176672	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs1176675	0.93[AMR][1000 genomes]
rs1176676	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs1176678	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs1176681	0.87[ASN][1000 genomes]
rs1176682	0.87[ASN][1000 genomes]
rs11776873	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11782932	0.82[EUR][1000 genomes]
rs11784781	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12114518	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12114906	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1304378	0.88[AMR][1000 genomes]
rs13251060	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13258713	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13259052	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13261271	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13262019	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13264010	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13265186	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13268881	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[EUR][1000 genomes]
rs13270856	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs13278444	0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1365283	0.88[AMR][1000 genomes]
rs1390847	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1426293	0.86[AMR][1000 genomes]
rs1426295	0.93[AMR][1000 genomes]
rs2029934	0.90[ASN][1000 genomes]
rs2080612	0.93[AMR][1000 genomes]
rs2554733	0.88[AMR][1000 genomes]
rs3104249	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs3104251	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs3104253	0.93[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs3107464	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs3107465	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs3107471	0.87[ASN][1000 genomes]
rs3110455	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs3110456	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs3110458	0.85[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs3110459	0.91[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs3110460	1.00[CHB][hapmap];0.90[CHD][hapmap];0.81[GIH][hapmap];0.89[JPT][hapmap];0.87[ASN][1000 genomes]
rs3110466	0.94[ASN][1000 genomes]
rs3110473	0.93[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs3110474	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs35761468	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35964420	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs58480013	0.83[ASN][1000 genomes]
rs62527103	0.89[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs62527116	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62527117	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62527123	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7004037	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72681344	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7815614	0.88[AMR][1000 genomes]
rs7826043	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7837796	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs924165	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020476	chr8:104312212-104924482	Genic enhancers Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv539704	chr8:104312212-104924482	Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	esv2752692	chr8:104520824-105123824	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv1016387	chr8:104578389-104931853	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1031195	chr8:104601231-105194208	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
6	esv1841024	chr8:104872512-104908099	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:104859400-104897200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:104883800-104885600	Enhancers	Brain Cingulate Gyrus	brain
3	chr8:104885200-104885800	Enhancers	Brain Hippocampus Middle	brain

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