Variant report

Variant	rs3110550
Chromosome Location	chr18:25357990-25357991
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1420941	1.00[AMR][1000 genomes]
rs16943888	1.00[AMR][1000 genomes]
rs1861781	1.00[AMR][1000 genomes]
rs2714375	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28404348	1.00[AMR][1000 genomes]
rs3110549	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4261622	1.00[AMR][1000 genomes]
rs56774619	1.00[AMR][1000 genomes]
rs7230612	1.00[AMR][1000 genomes]
rs7242276	1.00[AMR][1000 genomes]
rs8083675	1.00[AMR][1000 genomes]
rs8094042	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv833604	chr18:25226727-25417423	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1058084	chr18:25355165-25383779	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1056800	chr18:25357990-25379390	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25352400-25359600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr18:25357800-25358200	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
3	chr18:25357800-25359000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr18:25357800-25359800	Enhancers	iPS-18 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links