Variant report

Variant	rs8083675
Chromosome Location	chr18:25340152-25340153
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1420941	1.00[AMR][1000 genomes]
rs16943888	1.00[AMR][1000 genomes]
rs1861781	1.00[AMR][1000 genomes]
rs2714375	1.00[AMR][1000 genomes]
rs28404348	1.00[AMR][1000 genomes]
rs3110549	1.00[AMR][1000 genomes]
rs3110550	1.00[AMR][1000 genomes]
rs4261622	1.00[AMR][1000 genomes]
rs56774619	1.00[AMR][1000 genomes]
rs61750936	0.86[AFR][1000 genomes]
rs7230612	1.00[AMR][1000 genomes]
rs7242276	1.00[AMR][1000 genomes]
rs8094042	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv833604	chr18:25226727-25417423	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25333800-25341600	Weak transcription	Brain Germinal Matrix	brain
2	chr18:25337000-25341600	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr18:25337200-25341800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr18:25338400-25341800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr18:25338600-25341600	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr18:25338600-25341600	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr18:25338800-25341600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr18:25339000-25341800	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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