Variant report

Variant	rs61750936
Chromosome Location	chr18:25307954-25307955
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10775519	1.00[AMR][1000 genomes]
rs2001312	1.00[AMR][1000 genomes]
rs4239449	1.00[AMR][1000 genomes]
rs4239450	1.00[AMR][1000 genomes]
rs4362461	1.00[AMR][1000 genomes]
rs4362462	1.00[AMR][1000 genomes]
rs4380122	1.00[AMR][1000 genomes]
rs4462687	1.00[AMR][1000 genomes]
rs7235802	1.00[AMR][1000 genomes]
rs8083675	0.86[AFR][1000 genomes]
rs8094042	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv833604	chr18:25226727-25417423	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv521603	chr18:25299829-25309414	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25307800-25308400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr18:25307800-25308600	ZNF genes & repeats	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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