Variant report

Variant	rs3111433
Chromosome Location	chr7:112220830-112220831
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1234346	0.85[AFR][1000 genomes]
rs1236840	0.83[AFR][1000 genomes]
rs3095023	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3095043	0.93[CEU][hapmap]
rs3128405	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases
2	nsv889055	chr7:112174089-112353440	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112214000-112221600	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr7:112218200-112222000	Enhancers	Fetal Heart	heart
3	chr7:112220000-112221200	ZNF genes & repeats	Fetal Intestine Small	intestine
4	chr7:112220600-112221000	Enhancers	Right Ventricle	heart
5	chr7:112220800-112221400	Enhancers	HSMMtube	muscle
6	chr7:112220800-112222000	Enhancers	Fetal Intestine Large	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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